Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_N24
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18229| Best HMM Match : RVT_1 (HMM E-Value=0.82)                    32   0.62 
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_46703| Best HMM Match : Extensin_2 (HMM E-Value=1.4)                30   2.5  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  

>SB_18229| Best HMM Match : RVT_1 (HMM E-Value=0.82)
          Length = 458

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 18/78 (23%), Positives = 32/78 (41%)
 Frame = +3

Query: 204 DDFEHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDS 383
           D+ +   R  K   AD+  H   +  +      R PA    P +  ++      +K    
Sbjct: 369 DETDETTRPAKNKRADAATHQEEI--EMHCPHPRRPAKPAMPTTHKQQQQQQQQEKQPSK 426

Query: 384 ESDADTAGESPLHRPEPR 437
           ++   TA + P+H+PE R
Sbjct: 427 KAPEITAQDGPVHQPEQR 444


>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
 Frame = +3

Query: 198 STDDFEHLDRETKQDPADSPVHHHRVATQSFLEMER--------GPAAEHRPPSVAEKLM 353
           S D    + R     P  S V H  V  Q++++ E+          A EHRP     K  
Sbjct: 595 SCDAPPDMPRHGVPPPHPSSVPHQPVVKQAWVQPEQQVVYKAASDQAKEHRPVDRPTKGQ 654

Query: 354 DH--MADKFTDSESDADTAGESPLHRPEPRVEL 446
               MA K T +++      ESPLH P PR  L
Sbjct: 655 RDKTMAVKSTKTQTSPQEYRESPLHTPLPRKRL 687


>SB_46703| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
          Length = 564

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 264 HHRVATQSFLEMERGPAAEHRP-PSVAEKLMDHMADKFTDSESDADTAGESPLHRPEPRV 440
           +HR + QS   +  G    HRP P V   + D +  +++D +S   T G    HRP+P+V
Sbjct: 427 NHRYSDQS-QTLTTGIPISHRPQPQVFRSVTD-LNHRYSD-QSQTSTTGIPISHRPQPQV 483



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 264 HHRVATQSFLEMERGPAAEHRP-PSVAEKLMDHMADKFTDSESDADTAGESPLHRPEPRV 440
           +HR + QS       P + HRP P V + + D +  +++D +S   T G    HRP+P+V
Sbjct: 363 NHRYSDQSQTSTTGIPIS-HRPQPQVFQSVTD-LNHRYSD-QSQTSTTGIPISHRPQPQV 419


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = +3

Query: 216 HLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLM---DHMADKFTDSE 386
           H     K+D  DSPV    ++     E ++    E  PP    K M    +     ++SE
Sbjct: 739 HRSEYKKRDVQDSPVRQPSLSPSPSPERKKEDPKEKSPPLPKSKKMANRSYRKHNSSESE 798

Query: 387 SDADTAGESPLHRPEPR 437
           SD+D+  E       PR
Sbjct: 799 SDSDSPPERKKGSVSPR 815


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,228,372
Number of Sequences: 59808
Number of extensions: 401667
Number of successful extensions: 1314
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)