Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_N20
         (826 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62470.1 68418.m07839 myb family transcription factor (MYB96)...    30   1.6  
At1g14160.1 68414.m01674 integral membrane family protein locati...    29   5.0  
At5g38720.1 68418.m04683 expressed protein predicted protein, Dr...    28   6.5  
At3g28910.1 68416.m03608 myb family transcription factor (MYB30)...    28   8.7  

>At5g62470.1 68418.m07839 myb family transcription factor (MYB96)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 351

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +2

Query: 371 DGLEVTYVREFGPEEMKAVMTAKDVTCTRVYKVQ*GLYSEVGSRCRRFTNIPRHNYVYLA 550
           D + V+Y++E GP   ++V T   + C++  +++   Y   G +   FT       V+L 
Sbjct: 22  DIILVSYIQEHGPGNWRSVPTHTGLRCSKSCRLRWTNYLRPGIKRGNFTEHEEKTIVHLQ 81

Query: 551 SIL 559
           ++L
Sbjct: 82  ALL 84


>At1g14160.1 68414.m01674 integral membrane family protein location
           of EST 168K9XP 3', gb|AA651045; contains TIGRFAM
           TIGR01569 : plant integral membrane protein TIGR01569;
           contains Pfam PF04535 : Domain of unknown function
           (DUF588)
          Length = 209

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 821 HLFNTQWKTSSVIFLKIKTLTLA 753
           H+F+TQ KTS +I L + T+ LA
Sbjct: 120 HIFSTQAKTSRIILLVVDTVMLA 142


>At5g38720.1 68418.m04683 expressed protein predicted protein,
           Drosophila melanogaster
          Length = 306

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 149 VGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADG 307
           VG   ++  N     VEL +D     L   S+ K    K + G+E +   ADG
Sbjct: 18  VGKKIQRKKNEKVSNVELSEDPQAAQLQAKSSEKPNRKKIQKGKEIKSSPADG 70


>At3g28910.1 68416.m03608 myb family transcription factor (MYB30)
           identical to myb-like protein GB:AJ007289 [Arabidopsis
           thaliana] (Plant J. 20 (1), 57-66 (1999))
          Length = 323

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 371 DGLEVTYVREFGPEEMKAVMTAKD-VTCTRVYKVQ*GLYSEVGSRCRRFTNIPRHNYVYL 547
           D + VTY++E GP   +AV T    + C++  +++   Y   G +   FT       V+L
Sbjct: 22  DIILVTYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTEHEEKMIVHL 81

Query: 548 ASIL 559
            ++L
Sbjct: 82  QALL 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,785,890
Number of Sequences: 28952
Number of extensions: 303284
Number of successful extensions: 752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)