Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_N18
(763 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 30 2.4
SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5) 30 2.4
SB_12663| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_9537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_48356| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 35.5 bits (78), Expect = 0.047
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 5/117 (4%)
Frame = +3
Query: 411 RSCLERCPRPLMERCPC-CCSFMERCPSSFLEXXXXXXXXXXXXXXXXXXXXXXLGRSIC 587
+ C E CP+ CP CCS + CP++ L C
Sbjct: 1718 KECKESCPKVCGPGCPVQCCSDLNICPANCTGSACKPGCITIEDSVTVSLGNDKLCPEAC 1777
Query: 588 R*VRC--SCPTTMERPSSPGLECPRPPGLERSRSPGLECSR--SPIMERSSLLAIRC 746
+C SCP+T +SP + CP+ + + C + SP E ++ A +C
Sbjct: 1778 L-TKCLPSCPSTCCIKNSPPVVCPKSCETTCTPDCPVMCCKNSSPATECPTICASKC 1833
>SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 710 W*AGAFQSW*AGAFQSWWAGAFQSW 636
W G SW +G SW++G SW
Sbjct: 533 WFYGVLSSWFSGELSSWFSGELSSW 557
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = -3
Query: 758 W*AGAPDCQEGAPFHDW*AGAFQSW*AGAFQSWWAGAFQSW*AGAF 621
W G W G F SW G SW+ G W G F
Sbjct: 143 WFYGELSSSLSGELSSWFYGEFSSWFYGEISSWFYGELSFWFYGEF 188
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = -3
Query: 758 W*AGAPDCQEGAPFHDW*AGAFQSW*AGAFQSWWAGAFQSW*AGAF 621
W G W G F SW G SW+ G W G F
Sbjct: 389 WFYGELSSSLSGELSSWFYGEFSSWFYGEISSWFYGELSFWFYGEF 434
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -3
Query: 710 W*AGAFQSW*AGAFQSWWAGAFQSW*AGAF 621
W G F SW G SW+ G W G F
Sbjct: 63 WFYGEFSSWFYGEISSWFYGELSFWFYGEF 92
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -3
Query: 719 FHDW*AGAFQSW*AGAFQSWWAGAFQSW 636
F W G SW G W+ G F SW
Sbjct: 68 FSSWFYGEISSWFYGELSFWFYGEFSSW 95
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -3
Query: 719 FHDW*AGAFQSW*AGAFQSWWAGAFQSW 636
F W G SW G W+ G F SW
Sbjct: 164 FSSWFYGEISSWFYGELSFWFYGEFSSW 191
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -3
Query: 719 FHDW*AGAFQSW*AGAFQSWWAGAFQSW 636
F W G SW G W+ G F SW
Sbjct: 410 FSSWFYGEISSWFYGELSFWFYGEFSSW 437
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 704 AGAFQSW*AGAFQSWWAGAFQSW*AG 627
+G SW G SW++G SW +G
Sbjct: 527 SGELSSWFYGVLSSWFSGELSSWFSG 552
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 701 GAFQSW*AGAFQSWWAGAFQSW 636
G SW G F SW+ G SW
Sbjct: 58 GELSSWFYGEFSSWFYGEISSW 79
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/41 (29%), Positives = 13/41 (31%)
Frame = -3
Query: 758 W*AGAPDCQEGAPFHDW*AGAFQSW*AGAFQSWWAGAFQSW 636
W G W G SW G SW+ G SW
Sbjct: 95 WFYGELSSSLSGELSSWLYGELSSWFYGELSSWFYGELSSW 135
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 603 SCPTTMERPSSPGLECPR--PPGLERSRSPGLECSRSPIMERSSLLAIRCPRS 755
S P P + L PR P R++SP L +PI E S L +R P++
Sbjct: 2309 STPVPKSSPINSPLTSPRDSPVPFSRAKSPQLSVDFAPITESSVKLNVRLPQT 2361
>SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5)
Length = 348
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 600 CSCPTTMERPSSPGLECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSP 758
C+ +++E P EC P E + P EC+ P E + +L++ C P
Sbjct: 157 CALISSLECAFIPSSECALIPCSECALIPSSECALIPSSESALILSLECALIP 209
>SB_12663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 654 RPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSP 758
R PG++ +RSPG + +RSP + + L + RSP
Sbjct: 3 RSPGIQVARSPGRQVARSPGHQVARSLGRQVARSP 37
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 633 SPGLECPRPPGLERSRSPGLECSRS 707
SPG++ R PG + +RSPG + +RS
Sbjct: 4 SPGIQVARSPGRQVARSPGHQVARS 28
>SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 713 DW*AGAFQSW*AGAFQSWWAGAFQSW*AG 627
DW AG W AG W AG W AG
Sbjct: 227 DWMAGWLAGWLAGWLAGWLAGWLAGWLAG 255
>SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 609 PTTMERPSSPGLECPRPPGLERSRSP-GLECSRSP 710
PTT E P P + P+PP + S+ P GL R P
Sbjct: 452 PTTTETPIVPTVPGPQPPIIVGSKGPDGLRGYRGP 486
>SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 21 RHSDSWKSLVFQQRYQPTKTNTIFIFLSLFHFCASFHYEN 140
R W ++F + Q K IF+ S CA H+EN
Sbjct: 460 RRQKDWFEIIFWESGQANKHFPIFVRASDLEACARTHHEN 499
>SB_9537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 612 TTMERPSSPGLECPRPPGLERSRSPGLECSRSP 710
+T P+ PG RP ER R LEC P
Sbjct: 50 STWTIPTDPGYNTRRPSSAERYRQSPLECRPKP 82
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 646 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHXP 762
N P +Q N P +Q N P +Q N + + P + P
Sbjct: 214 NQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQP 252
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 646 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHXP 762
N P +Q N P +Q N P +Q N + + P + P
Sbjct: 218 NQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQP 256
>SB_48356| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 274 ARAAHISALQQASKNNPNPNDDGSYDPRWDNEE 372
++A I L++ SK + + +DD YD DNE+
Sbjct: 44 SKATGIKPLERESKEDNDRDDDDDYDDDVDNED 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.127 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,108,108
Number of Sequences: 59808
Number of extensions: 354650
Number of successful extensions: 1391
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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