Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_N18
         (763 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    32   0.36 
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina...    31   0.84 
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi...    30   1.9  
At5g16520.1 68418.m01932 expressed protein                             29   3.4  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    29   4.5  
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r...    28   5.9  
At2g08986.1 68415.m01009 hypothetical protein                          28   5.9  

>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 646 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHXP 762
           ++PAH   ++PAH   ++PAH   +      S +PAH P
Sbjct: 223 HSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAP 261



 Score = 32.3 bits (70), Expect = 0.36
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 646 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHXP 762
           ++PAH   ++PAH   ++PAH   +      S +PAH P
Sbjct: 231 HSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSP 269



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 646 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHXP 762
           + P+H   +AP+H   +AP+H   +      + +P+H P
Sbjct: 235 HTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHSP 273



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 646 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHXP 762
           + P+H   + P+H   +AP+H   +      + AP+H P
Sbjct: 227 HTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSP 265



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 646 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHXP 762
           ++PAH   ++PAH   ++PAH   +   + +S +P+  P
Sbjct: 247 HSPAHAPSHSPAHAPSHSPAHSPSHSPATPKSPSPSSSP 285



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 646 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHXP 762
           +AP+H   +AP+H   ++P+H          S +PA  P
Sbjct: 251 HAPSHSPAHAPSHSPAHSPSHSPATPKSPSPSSSPAQSP 289



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 655 AHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHXP 762
           +H   ++PAH   ++PAH   +      S +PAH P
Sbjct: 218 SHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAP 253



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 646 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHXP 762
           ++P+H   + P+H   + P+H   +      + AP+H P
Sbjct: 219 HSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSP 257


>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to SP|Q9Z1T6 FYVE
           finger-containing phosphoinositide kinase (EC 2.7.1.68)
           (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
           (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF01363: FYVE zinc finger, PF00118:
           TCP-1/cpn60 chaperonin family
          Length = 1756

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 367 HCPI*GRMIRRHLGWGYFSKPAEERKCVRHEPVRLRVCPEYC 242
           HC + GR+            P++E K    EP R+RVC  YC
Sbjct: 57  HCRLCGRVFCAKCAANSIPSPSDETKDSHEEPERIRVC-NYC 97


>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
           to CLC-d chloride channel protein [Arabidopsis thaliana]
           GI:1742959
          Length = 792

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 597 RCS-CPTTMERPSSPGLECPRPPGL 668
           +CS CP ++  P S G+ECPRPPG+
Sbjct: 383 KCSPCPESV--PDS-GIECPRPPGM 404


>At5g16520.1 68418.m01932 expressed protein 
          Length = 608

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 53  PAALSTDKNKHYLYLSFTLSLLCFISLRK 139
           P+ +STDK+ +Y  +SF  +L  F  +RK
Sbjct: 36  PSTISTDKDVNYSVISFAETLFAFDRIRK 64


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/52 (38%), Positives = 22/52 (42%)
 Frame = +3

Query: 594 VRCSCPTTMERPSSPGLECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCP 749
           VR   PT + R S       R P   R RSP    SRSP   RS  +  R P
Sbjct: 581 VRRRSPTPVNRRSRRSSSASRSPDRRRRRSP--SSSRSPSRSRSPPVLHRSP 630


>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
            factory-related similar to RNA helicase GB:AAF03534
          Length = 1317

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -2

Query: 309  SLLKSGNVCGTSLCDFGCVQNIASILRQS--NVGGWAGPTGRVCAA 178
            S  K G +    LC FGC Q +   +R       GW  P G+  AA
Sbjct: 955  STKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVP-GQSSAA 999


>At2g08986.1 68415.m01009 hypothetical protein
          Length = 1218

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 254 THPKSHRLVPHTFPLFSRLRKITPTQMTTDHTTLDGTMKSTGNKLRVN 397
           T PK+H    +T       +K+     T  HT  D TMK+  +K +VN
Sbjct: 759 TKPKTHMDFGYTMKALRSKKKVDTKPKT--HTNFDYTMKALRSKKKVN 804



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 254 THPKSHRLVPHTFPLFSRLRKITPTQMTTDHTTLDGTMKSTGNKLRVN 397
           T PK+H    +T       +K+     T  HT  D TMK+  +K +VN
Sbjct: 390 TKPKTHMDFGYTMKALRSKKKVDTKPKT--HTDFDYTMKALRSKKKVN 435


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.127    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,998,644
Number of Sequences: 28952
Number of extensions: 234408
Number of successful extensions: 786
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)