Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_N17
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328...    35   0.068
06_01_0172 + 1362101-1363708                                           31   0.84 
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931     31   1.1  
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88...    30   1.9  
09_04_0377 + 17086775-17088310                                         30   1.9  
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289...    29   3.4  
12_02_0259 + 16527788-16527842,16528014-16528381                       28   7.8  

>05_03_0604 -
           16132173-16132391,16132488-16132556,16132824-16132898,
           16132981-16133113,16133188-16133297,16133360-16133407,
           16133657-16133983,16135006-16135233,16135360-16135689,
           16135780-16136586
          Length = 781

 Score = 35.1 bits (77), Expect = 0.068
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
 Frame = +2

Query: 119 QYQFFPVSSGSVQFKVRAANDAHVALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKPDK 298
           +++F     G + F+  A ND  V L    Q     Y   +    +   ++  +R K  K
Sbjct: 22  EFRFRETGRGCITFEASAHND--VTLVFREQPGSQHYHYKMDNSRHYIVILGSHRNKRLK 79

Query: 299 VEIESP--------GILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP-FPVY 445
           +E++          G+     ++ +W+    G+IS   GR         W DP+P   V 
Sbjct: 80  IEVDGKTVVDVAGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQ 139

Query: 446 YVGVCTGW 469
           YVG+ + W
Sbjct: 140 YVGL-SSW 146


>06_01_0172 + 1362101-1363708
          Length = 535

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
 Frame = +3

Query: 240 LEAGETLRASSGKIEPSPIRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSY-- 413
           L +   LR ++     +P +L +  P  L   NI++ G VGI     LDA +K+      
Sbjct: 167 LVSARRLRLAAALFRAAPTKLYI-TPN-LVSCNILLKGLVGIG---DLDAALKVLDEMPG 221

Query: 414 LGLIPNLSQFTTSESAQAGVPQAPGKSK 497
           LG+ P++  +TT  SA  G     G  K
Sbjct: 222 LGITPDVVTYTTVLSAYCGKGDIEGAQK 249


>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
          Length = 246

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 323 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 433
           L G  +R  WV W   +I AG  G    F+    PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231


>11_01_0113 +
           881806-881996,882831-882921,883140-883255,884489-885260
          Length = 389

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 532 RSTPWLPWRLRRKRTPSVWRLRRKRTPSVWRSRYMG*CF--RRSSTSWRRC 678
           RS P + WR RR R+P  W +  K    V     MG CF  RR   +  RC
Sbjct: 31  RSAPSILWRRRRPRSPCPWSV-EKGEEVVLVHASMGNCFGGRRPHPNRGRC 80


>09_04_0377 + 17086775-17088310
          Length = 511

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 562 RRKRTPSVWRLRRKRTPSVWRSR 630
           RR R+PS +R RR R+PS +R R
Sbjct: 43  RRDRSPSPYRSRRDRSPSPYRDR 65


>01_06_0837 -
           32328191-32328369,32328682-32328731,32328844-32328923,
           32329193-32329345,32329505-32329654,32329877-32330000,
           32330086-32330198,32330287-32330420,32330566-32331232
          Length = 549

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +2

Query: 311 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 448
           SP +L GG Y G    W+R     I+ G    + P + + D  P  ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259


>12_02_0259 + 16527788-16527842,16528014-16528381
          Length = 140

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -3

Query: 409 EWNSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVS 251
           E +S  +A+ G  +A+P  PK  +F  +       + L+G G   P++  SV+
Sbjct: 68  EVSSVVVAAPGFRSAVPVEPK--LFRRIAGGEEKGYYLVGDGEAIPNNGSSVT 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,626,700
Number of Sequences: 37544
Number of extensions: 483517
Number of successful extensions: 1634
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)