SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_N17
         (822 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)                   31   1.1  
SB_48379| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)                 30   2.6  
SB_49105| Best HMM Match : NDK (HMM E-Value=5.5)                       30   2.6  
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_45724| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_4132| Best HMM Match : cNMP_binding (HMM E-Value=5.9e-14)           29   4.6  
SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)                    29   6.0  
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)           28   8.0  

>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 24/91 (26%), Positives = 37/91 (40%)
 Frame = -2

Query: 731  REPHEPHTEALXSSPVLPQRRQEVLDLLKHQPIYRLLQTEGVRFLRSLQTEGVRFLRSLQ 552
            RE  + H   L S PVL       L LL+   + +LL+  G    +    E   +LR   
Sbjct: 2090 REDKDSHVSHLTSGPVL------ALSLLRENAVGKLLEVVGPSCPQVAHKESQFYLRGSY 2143

Query: 551  GSQGVLRTMQLLQVQSVALRFSRSLWHPSLC 459
            G+  +   +      S ++R    L+H  LC
Sbjct: 2144 GTDRIRNAIYASPSYSASVRDHMLLFHDGLC 2174


>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
          Length = 415

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 286 GSIFPDDALSVSPASNHHL-IHRIRFLRACRERDVGIIRCSDFEL 155
           GSIF D    VS   NH L + R + L  C+ER++G     D EL
Sbjct: 303 GSIFHDKTFIVSDLRNHVLRVFRQKGLTICKERNIGQRGGKDGEL 347


>SB_48379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 553 WRLRRKRTPSVWRLRRKRTPSVWRSR 630
           WR +  R   VWR +  R   VWRS+
Sbjct: 41  WRSKNNRLGGVWRSKNNRLGGVWRSK 66



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 553 WRLRRKRTPSVWRLRRKRTPSVWRSR 630
           WR +  R   VWR +  R   VWRS+
Sbjct: 52  WRSKNNRLGGVWRSKNNRLGGVWRSK 77



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 553 WRLRRKRTPSVWRLRRKRTPSVWRS 627
           WR +  R   VWR +  R   VWRS
Sbjct: 63  WRSKNNRLGGVWRSKNNRLGGVWRS 87



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 553 WRLRRKRTPSVWRLRRKRTPSVWRSR 630
           WR +  +   VWR +  R   VWRS+
Sbjct: 30  WRSKNNKLGGVWRSKNNRLGGVWRSK 55


>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
          Length = 878

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 209 QESDPMYEVMIGGWGNAKSVIRKN-RTKPDKVEIESPGILNGG 334
           Q+ D MYEV+I       + +RK+ R+  D  E E PGI+ GG
Sbjct: 766 QQQDQMYEVLI------HNALRKSFRSDEDDDENEEPGIIRGG 802


>SB_49105| Best HMM Match : NDK (HMM E-Value=5.5)
          Length = 92

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 22/87 (25%), Positives = 35/87 (40%)
 Frame = -2

Query: 719 EPHTEALXSSPVLPQRRQEVLDLLKHQPIYRLLQTEGVRFLRSLQTEGVRFLRSLQGSQG 540
           + H   L S PVL       L LL+   + +LL+  G    +    E   +LR   G+  
Sbjct: 1   DSHVSHLTSGPVL------ALSLLRENAVGKLLEVVGPSCPQVAHKESQFYLRGSYGTDR 54

Query: 539 VLRTMQLLQVQSVALRFSRSLWHPSLC 459
           +   +      S ++R    L+H  LC
Sbjct: 55  IRNAIYASPSYSASVRDHMLLFHDGLC 81


>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 203 GPQESDPMYEVMIGGWGNAKSVIRKNRT-KPDKVEIESPGILNGGEY 340
           GP +   +    +G W    S  R  +T  P KV +  PGI NG  Y
Sbjct: 84  GPTQDCDVNSGEVGPWKEVPSCSRVGQTGDPSKVRVYGPGIENGLRY 130


>SB_45724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 519 QLHCTQHPL-ATLEATEETYPLRLEATEETYPLRLE 623
           +L  T +P    LE T   Y LRLE T   Y LRLE
Sbjct: 118 RLELTANPYNLRLELTANPYNLRLELTSNPYNLRLE 153


>SB_4132| Best HMM Match : cNMP_binding (HMM E-Value=5.9e-14)
          Length = 193

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -2

Query: 746 GSWHLREPHEPHTEALXSSPVLPQRRQEVLDLLKHQPIYRLL 621
           GS+H  EP + + EAL +S VL  ++++ + +    P + L+
Sbjct: 84  GSFHSEEPSKFYIEALENSTVLQIQKEDQIRMFVDYPKFNLI 125


>SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)
          Length = 283

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = +2

Query: 143 SGSVQFKVRAANDAHVALTTGPQESDPMYEVMI-------GGWGNAKSVIRKNRTKPDKV 301
           SGSV + V  A  +H  L    + + P+Y + +          G    V+R    +P+K 
Sbjct: 84  SGSVNYFVAPAESSHSQLVLIEELNQPIYSLTLKIIICLSETTGTLPLVLRNALPRPEKY 143

Query: 302 EIESPGILNG 331
              SPG L G
Sbjct: 144 PENSPGTLTG 153


>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
          Length = 225

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 299 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 451
           + I + GI +  +   FWV + S  +  G     I    W+DP+P  V YY+
Sbjct: 1   LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,283,025
Number of Sequences: 59808
Number of extensions: 523782
Number of successful extensions: 1653
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1648
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -