Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_N15
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...   138   8e-34
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    29   0.76 
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.3  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.0  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.0  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.3  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   9.3  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   9.3  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score =  138 bits (334), Expect = 8e-34
 Identities = 74/241 (30%), Positives = 127/241 (52%), Gaps = 2/241 (0%)
 Frame = +3

Query: 69  MASIPLMYAQEDCELGGKESVEDDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATVSI 248
           +A  P  Y++ + E   +    D F     V    + IR+AF+RKVY +LT QL  T   
Sbjct: 18  LAQAPPAYSEYN-ESATENPAVDQFKNTTPVAECAKSIRMAFLRKVYAILTAQLFVTSLF 76

Query: 249 AAVFMFVEPVQTF-IHTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYT 425
             +F ++ P  +F +  + W +I+ F +S+  L  LI+K    P N   L  FT ++  T
Sbjct: 77  GGIF-YLHPAFSFWVQMHPWFLILNFFISLVVLFGLIMKPYSYPRNYIFLFLFTALEGLT 135

Query: 426 IGVVVSYYNTMVVLQALALTFAVVFSLTLYTLNSKRDFSFIGYMXXXXXXXXXXXXXXXX 605
           +G  +++++  ++L+A+ +T  V  +LT +T  SK DFS +G                  
Sbjct: 136 LGTAITFFSARIILEAVFITLGVFVALTAFTFQSKWDFSRLGGFLYVSLWSLILTPLIFF 195

Query: 606 XXQSAAF-EMALSIVGAIFFXMFLVYDTHQMMRVLSPEEYILATINLYLDILNLFLYILX 782
              S  F +MA +  G + F  ++++DT+ ++   SPEE+I++++ LYLD +NLF+ IL 
Sbjct: 196 FVPSTPFIDMAFAGFGTLVFCGYILFDTYNILHRYSPEEFIMSSLMLYLDFINLFIRILQ 255

Query: 783 I 785
           I
Sbjct: 256 I 256


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 167  IHYIVAVCKVILNRFLPS*FTVFLGVH*RYRSHFHKFRWVF 45
            + Y+V +   +LN+F    FT  +GV   YRS  H+ R  F
Sbjct: 1510 VEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAF 1550


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = +3

Query: 363 RRDSPANLYLLAAFTVIQAYTIGVVVSYYNT 455
           ++D   +L++LAA+  ++ + + +V+ Y+NT
Sbjct: 208 QKDFHFDLHILAAYLGVEGHPLDLVIDYHNT 238


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 707 QDPHHLVRVVNEEHXEEYRADDGQSHFEGGALHHQLKKTPQNENC-QTSYEH 555
           +D H L  ++   H E+     G   F   A+  + KK  +NEN  +T+ +H
Sbjct: 755 KDDHELEDMI---HDEQQETKSGHEQFREHAMKEKEKKGKENENMGETTVDH 803


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 689 PDDEGPVPGGVHLGNHQSILGHSEP 763
           P+ E P   G+   +  S+LGHS+P
Sbjct: 423 PNFELPESNGIEFAHEDSVLGHSKP 447


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 61  NFVGFSTIYHVYYCRTFPI 5
           NF  +ST Y ++Y R FP+
Sbjct: 238 NFDDYSTSYELFYDRNFPL 256


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -1

Query: 774 CTGIGSECPSID*WLPR--CTPP-GTGPSSSGAC 682
           CTGI S+CP  + W     C    G G  +SG C
Sbjct: 387 CTGISSKCPVDENWDDGRICQDSLGMGSCASGVC 420


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -2

Query: 635  SHFEGGALHHQLKKTPQNENCQTSYEHVSNE*EVPFGIKRVQCERKYDGE 486
            S+F    L    KK P+N         VSNE  V  G K +Q  +K+  E
Sbjct: 1142 SYFTDSVLLSMAKKLPRNVKELKEIHGVSNEKAVNLGPKFLQVIQKFIDE 1191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,807
Number of Sequences: 5004
Number of extensions: 68975
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)