Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_N15
(786 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34537| Best HMM Match : UPF0005 (HMM E-Value=6.5e-05) 93 2e-19
SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022) 66 2e-11
SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021) 34 0.15
SB_14785| Best HMM Match : Nuc_sug_transp (HMM E-Value=5.1e-15) 30 1.8
SB_31077| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_20186| Best HMM Match : hATC (HMM E-Value=0.14) 30 2.4
SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_29731| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_3593| Best HMM Match : NAD4L (HMM E-Value=2.3) 28 9.9
>SB_34537| Best HMM Match : UPF0005 (HMM E-Value=6.5e-05)
Length = 179
Score = 93.5 bits (222), Expect = 2e-19
Identities = 43/98 (43%), Positives = 64/98 (65%)
Frame = +3
Query: 126 SVEDDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNNW 305
S+E+DF Y V +RL F+RKVYG+L+ QL T+ ++A+FM ++ F+ +
Sbjct: 19 SIEEDFTYGVTVAQTNINVRLGFLRKVYGILSAQLGLTILVSALFMSTPAIKDFVQSRPE 78
Query: 306 MMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQA 419
++ +AFILS G LIAL+ KRR+SP N+YLL F Q+
Sbjct: 79 VLFVAFILSFGFLIALMFKRRESPMNMYLLFGFMFFQS 116
Score = 77.8 bits (183), Expect = 9e-15
Identities = 33/58 (56%), Positives = 46/58 (79%)
Frame = +3
Query: 612 QSAAFEMALSIVGAIFFXMFLVYDTHQMMRVLSPEEYILATINLYLDILNLFLYILXI 785
QS E+A +++GA+ F F+V+DTH +M +SPEEYILA+INLY+DI+NLF+ IL I
Sbjct: 115 QSDILELAYAVLGALLFSAFIVFDTHMLMNKMSPEEYILASINLYMDIINLFIQILKI 172
>SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)
Length = 192
Score = 66.5 bits (155), Expect = 2e-11
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Frame = +3
Query: 435 VVSYYNTMVVLQALALTFAVVFSLTLYTLNSKRDFSFIGYMXXXXXXXXXXXXXXXXXXQ 614
V+S+ V+ A LT + + L N + DF+ +G
Sbjct: 66 VISFMKCTYVMYA-QLTLILKIVIILLFWNFQYDFTMMGGFLFVALIVLICFGFLAIFFH 124
Query: 615 SAAFEMALSIVGAIFFXMFLVYDTHQMMR-----VLSPEEYILATINLYLDILNLFLYIL 779
+ ++ + +GA+ F ++LVYDT MM +SPEEYI A +NLYLDI+N+FLYIL
Sbjct: 125 NRVVQIVYASLGALLFALYLVYDTQIMMGGGKMYSISPEEYIFAALNLYLDIVNMFLYIL 184
Query: 780 XI 785
+
Sbjct: 185 QL 186
>SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021)
Length = 344
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Frame = +3
Query: 648 GAIFFXMFLVYDTHQMMRVLS--------PEEYILATINLYLDILNLFLYILXI 785
G + F FL+YDT +++R P + I A+I +Y+D +N+F+ I+ I
Sbjct: 282 GLVIFGGFLLYDTQKIIRQAETHPLYASRPYDPINASIGIYMDTINIFIRIVTI 335
>SB_14785| Best HMM Match : Nuc_sug_transp (HMM E-Value=5.1e-15)
Length = 261
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/87 (21%), Positives = 39/87 (44%)
Frame = +3
Query: 291 HTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQ 470
H ++I + G +ALI+K RD N++ + +F + I V + + L+
Sbjct: 163 HNTQSFLLIIVTAAYGLTVALILKFRD---NMFQVMSFQLTNVLIITSSVLFMDFHPALE 219
Query: 471 ALALTFAVVFSLTLYTLNSKRDFSFIG 551
+ V+ ++ ++ K+D IG
Sbjct: 220 FFLIAPIVLLAIFVFNAGKKKDKKVIG 246
>SB_31077| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/76 (23%), Positives = 35/76 (46%)
Frame = +3
Query: 291 HTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQ 470
HT + II+ ++ +I +I+K D P +LL T++ TI ++ ++
Sbjct: 20 HTTVIIFIISTPITTTIVIIIIIKSLDEPPPCHLLPFTTIVIITTITTPITTTIVIITTI 79
Query: 471 ALALTFAVVFSLTLYT 518
+T +V T+ T
Sbjct: 80 TTPITTTIVIITTITT 95
>SB_20186| Best HMM Match : hATC (HMM E-Value=0.14)
Length = 709
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 150 RNNVMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNNWMMIIAFIL 329
++ V NAE+++ + I K YG + A V+ A ++PV +I T + + I
Sbjct: 48 KDAVTNAEKDVPDSEIAKKYGCAPTKTAAIVNYALAPEMLDPVVQYIKTQPFSLAIDGSS 107
Query: 330 SMGT--LIALIVKRRD 371
GT + L+V+ D
Sbjct: 108 DTGTASMYPLVVRIYD 123
>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1020
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Frame = +3
Query: 312 IIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTI--GVVVSYYNTMVVLQAL--- 476
I+AF+L+ T++ + +K R SP +++ TI G ++ ++ V A
Sbjct: 586 ILAFLLTNLTIL-MFIKHRTSPVVRACSFEISIVLLCTIALGFLIPFFEIGKVSDASCKT 644
Query: 477 -ALTFAVVFSLTLYTLNSK 530
A TFAVVF+ TL + +K
Sbjct: 645 SAFTFAVVFAATLSLILAK 663
>SB_29731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 659 EYRADDGQSHFEGGALHHQLKKTPQNENCQTSY 561
E+ DD +H+ A QL KTP N + Q +Y
Sbjct: 49 EHYLDDINTHYSVKATTLQLNKTPDNTHAQKNY 81
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 377 GRIASFHDQCNQSSHA*DKSNDHHPIIGVYKCL 279
G + + D+C+Q +H +K+ H I G YKC+
Sbjct: 554 GDLCTDIDECHQKAHLCNKNALCHNIPGSYKCM 586
>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -3
Query: 616 LCTTS*RRPPKMRTVKPATSMYPMNEKSRLELSVYSVRENTTANVKARACNTTM 455
+CT P R + P+T +Y ++ S +++ + + TAN R C + M
Sbjct: 501 MCTQRSENGPFWRKI-PSTFLYHLHVVSTIDMPPFKMSRFATANENQRVCLSAM 553
>SB_3593| Best HMM Match : NAD4L (HMM E-Value=2.3)
Length = 277
Score = 27.9 bits (59), Expect = 9.9
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 2/112 (1%)
Frame = +3
Query: 180 IRLAFIRKVYGLLTVQLLATVSIAAVFMFVEP--VQTFIHTNNWMMIIAFILSMGTLIAL 353
I +A I + ++ V + T I V + + FI T +MI+ I + +IAL
Sbjct: 99 IMIALIITITTIVIVFITTTTPIMIVLITTTTTIMNVFIITTTAIMIVFIITTTAIMIAL 158
Query: 354 IVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLT 509
I+ ++ I A I + + M+VL T VF +T
Sbjct: 159 II-----TTTAIMIVLIITITAIMIVFITTTTPIMIVLITTTTTIMNVFIIT 205
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,463,332
Number of Sequences: 59808
Number of extensions: 563693
Number of successful extensions: 1455
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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