Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_N15
(786 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14730.1 68417.m02265 transmembrane protein-related low simil... 126 1e-29
At4g02690.1 68417.m00364 hypothetical protein low similarity to ... 124 5e-29
At4g15470.1 68417.m02364 expressed protein low similarity to N-m... 123 1e-28
At1g03070.1 68414.m00281 expressed protein low similarity to N-m... 123 1e-28
At3g63310.1 68416.m07121 expressed protein low similarity to N-m... 117 8e-27
>At4g14730.1 68417.m02265 transmembrane protein-related low
similarity to transmembrane protein OTMP [Ovis aries]
GI:9965379
Length = 235
Score = 126 bits (305), Expect = 1e-29
Identities = 74/215 (34%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Frame = +3
Query: 162 MNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFI---HTNNWMMIIAFILS 332
M E+R AFIRK+Y +L++QLL TV ++AV FV P+ FI H + + +L
Sbjct: 18 MKESSELRWAFIRKLYSILSLQLLVTVGVSAVVYFVRPIPEFITETHRGLAVFFVILLLP 77
Query: 333 MGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTL 512
+ L L+ + P N +L+ FT+ ++++G+ S +VL+A LT +VF LT+
Sbjct: 78 LLLLWPLLAFEKKHPINCIVLSIFTLSISFSVGICCSLSQGRIVLEAAILTAVMVFGLTI 137
Query: 513 YTLNS-KR--DFSFIG-YMXXXXXXXXXXXXXXXXXXQSAAFEMALSIVGAIFFXMFLVY 680
YT + KR DFSF+G ++ M S + +I F ++++
Sbjct: 138 YTFWAVKRGHDFSFLGPFLFGALLIILVFTLLQIFHPLGKLSSMIFSGIASIVFCGYIIF 197
Query: 681 DTHQMMRVLSPEEYILATINLYLDILNLFLYILXI 785
DT+Q+++ L+ +EYI A I LYLD++NLFL +L I
Sbjct: 198 DTNQLIKKLNYDEYITAAIRLYLDVMNLFLSLLGI 232
>At4g02690.1 68417.m00364 hypothetical protein low similarity to
N-methyl-D-aspartate receptor-associated protein
[Drosophila melanogaster] GI:567104, NMDA receptor
glutamate-binding subunit [Rattus sp.] GI:8248741;
contains Pfam profile PF01027: Uncharacterized protein
family UPF0005
Length = 248
Score = 124 bits (300), Expect = 5e-29
Identities = 80/241 (33%), Positives = 123/241 (51%), Gaps = 7/241 (2%)
Frame = +3
Query: 84 LMYAQEDCELGGKESVEDDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFM 263
L Y ++D E G S Y M+ E+R FIRKVY ++ QLLATV++AA +
Sbjct: 6 LPYRKDDVETG--VSSRRPLLYP--AMHENPELRWGFIRKVYSIIAFQLLATVAVAATVV 61
Query: 264 FVEPVQTFIHTNNW---MMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGV 434
V P+ F T + I+ I + L L + P N LL FT+ A+ +G+
Sbjct: 62 TVRPIALFFATTGLGLALYIVIIITPLIVLCPLYYYHQKHPVNYLLLGIFTLALAFVVGL 121
Query: 435 VVSYYNTMVVLQALALTFAVVFSLTLYTLNSKR---DFSFIG-YMXXXXXXXXXXXXXXX 602
++ N V+L+++ LT VV SLTLYT + R DF+F+G ++
Sbjct: 122 TCAFTNGKVILESVILTSVVVLSLTLYTFWAARKGYDFNFLGPFLFGALTVLIFFALIQI 181
Query: 603 XXXQSAAFEMALSIVGAIFFXMFLVYDTHQMMRVLSPEEYILATINLYLDILNLFLYILX 782
M + +I F ++VYDT +++ + +EYI A ++LYLDI+NLFLY+L
Sbjct: 182 LFPLGRVSVMIYGCLVSIIFCGYIVYDTDNLIKRHTYDEYIWAAVSLYLDIINLFLYLLT 241
Query: 783 I 785
+
Sbjct: 242 V 242
>At4g15470.1 68417.m02364 expressed protein low similarity to
N-methyl-D-aspartate receptor-associated protein
[Drosophila melanogaster] GI:567104; contains Pfam
profile PF01027: Uncharacterized protein family UPF0005
Length = 256
Score = 123 bits (297), Expect = 1e-28
Identities = 77/209 (36%), Positives = 113/209 (54%), Gaps = 4/209 (1%)
Frame = +3
Query: 171 EREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNNWMMIIAFILSMGTLIA 350
E ++R FIRKVYG+L+ QLL T I+AV + PV + + +++ I+ +
Sbjct: 42 ENQLRWGFIRKVYGILSAQLLLTTLISAVVVLNPPVNDLLTGSPGILLFLCIVPFILIWP 101
Query: 351 LIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYTL--- 521
L + + P NL LLA FTV ++T+GV + +VLQAL LT +VV SLT YT
Sbjct: 102 LHIYHQKHPVNLILLALFTVSLSFTVGVSCAMTEGRIVLQALILTLSVVGSLTAYTFWAA 161
Query: 522 NSKRDFSFIGYMXXXXXXXXXXXXXXXXXXQSAAFEMAL-SIVGAIFFXMFLVYDTHQMM 698
+DFSF+G + +A+ A+ F ++VYDT ++
Sbjct: 162 KKGKDFSFLGPILFTSLIILVVTSFIQMFFPLGPTSVAVYGGFSALVFCGYIVYDTDNLI 221
Query: 699 RVLSPEEYILATINLYLDILNLFLYILXI 785
+ + +EYILA++ LYLDILNLFL IL I
Sbjct: 222 KRFTYDEYILASVALYLDILNLFLTILRI 250
>At1g03070.1 68414.m00281 expressed protein low similarity to
N-methyl-D-aspartate receptor-associated protein
[Drosophila melanogaster] GI:567104; contains Pfam
profile PF01027: Uncharacterized protein family UPF0005
Length = 247
Score = 123 bits (297), Expect = 1e-28
Identities = 80/241 (33%), Positives = 124/241 (51%), Gaps = 7/241 (2%)
Frame = +3
Query: 84 LMYAQEDCELGGKESVEDDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFM 263
L Y ++D E G +E E M E+R FIRKVY ++ QLLAT+++A+ +
Sbjct: 6 LPYRKDDVETG-REGGERSLY---PTMLESPELRWGFIRKVYSIIAFQLLATIAVASTVV 61
Query: 264 FVEPVQTFIHTNNWMMIIAFILSMGTLIA---LIVKRRDSPANLYLLAAFTVIQAYTIGV 434
FV P+ F T + + + +L + LI L + P N LL FTV A+ +G+
Sbjct: 62 FVRPIAVFFATTSAGLALWIVLIITPLIVMCPLYYYHQKHPVNYLLLGIFTVALAFAVGL 121
Query: 435 VVSYYNTMVVLQALALTFAVVFSLTLYTLNSKR---DFSFIG-YMXXXXXXXXXXXXXXX 602
++ + V+L+A LT VV SLT+YT + + DF+F+G ++
Sbjct: 122 TCAFTSGKVILEAAILTTVVVLSLTVYTFWAAKKGYDFNFLGPFLFGALIVLMVFALIQI 181
Query: 603 XXXQSAAFEMALSIVGAIFFXMFLVYDTHQMMRVLSPEEYILATINLYLDILNLFLYILX 782
M + AI F ++VYDT +++ S +EYI A ++LYLDI+NLFL +L
Sbjct: 182 FFPLGRISVMIYGCLAAIIFCGYIVYDTDNLIKRYSYDEYIWAAVSLYLDIINLFLALLT 241
Query: 783 I 785
I
Sbjct: 242 I 242
>At3g63310.1 68416.m07121 expressed protein low similarity to
N-methyl-D-aspartate receptor-associated protein
[Drosophila melanogaster] GI:567104; contains Pfam
profile PF01027: Uncharacterized protein family UPF0005
Length = 239
Score = 117 bits (282), Expect = 8e-27
Identities = 70/216 (32%), Positives = 116/216 (53%), Gaps = 7/216 (3%)
Frame = +3
Query: 159 VMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNNWMMIIAFILSMG 338
+M+ E+R +FIRKVY ++++QLL T+++AA + V + F T + +L +
Sbjct: 18 MMSESPELRWSFIRKVYSIISIQLLVTIAVAATVVKVHSISVFFTTTTAGFALYILLILT 77
Query: 339 TLIA---LIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLT 509
LI L + P N LL FTV A+ +G+ ++ + V+L+++ LT VV SLT
Sbjct: 78 PLIVMCPLYYYHQKHPVNYLLLGIFTVALAFAVGLTCAFTSGKVILESVILTAVVVISLT 137
Query: 510 LYTL-NSKR--DFSFIG-YMXXXXXXXXXXXXXXXXXXQSAAFEMALSIVGAIFFXMFLV 677
LYT +KR DF+F+G ++ M + +I F ++V
Sbjct: 138 LYTFWAAKRGHDFNFLGPFLFGAVIVLMVFSFIQILFPLGKISVMIYGCLASIIFCGYIV 197
Query: 678 YDTHQMMRVLSPEEYILATINLYLDILNLFLYILXI 785
YDT +++ S +EYI A ++LYLD++NLFL +L +
Sbjct: 198 YDTDNLIKRHSYDEYIWAAVSLYLDVINLFLSLLTL 233
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,422,404
Number of Sequences: 28952
Number of extensions: 367386
Number of successful extensions: 944
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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