Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_N07
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 36 0.038
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 34 0.087
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 31 1.1
03_06_0326 + 33150599-33150907,33151013-33151104,33151961-331520... 29 2.5
02_02_0637 - 12491706-12492575,12492580-12492657 28 5.7
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290... 28 7.6
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 28 7.6
02_05_0288 - 27549718-27549940,27550025-27550102,27550282-275506... 28 7.6
>02_01_0500 -
3623837-3624019,3624591-3624778,3625209-3626147,
3626311-3626479,3626701-3626871,3626948-3627016,
3627094-3627201,3627844-3627997,3628659-3628738,
3628822-3628914,3628951-3629073,3629165-3629915,
3630123-3630163,3630338-3630385
Length = 1038
Score = 35.5 bits (78), Expect = 0.038
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = -1
Query: 451 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQ 323
S ERR L+ RDR+P +H + R G ERS R+ R+R P+
Sbjct: 204 SEHERRGLSHERDRSPYMQHSRSRSRGRDERS-RSRSRSRSPR 245
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 34.3 bits (75), Expect = 0.087
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 254 ASAA*STVRLVPSD-SKREYCPTTLSPTRVSCWLLTSPVWGSD 129
+S A T+ L S+ K++Y P+ T V CW LT P GSD
Sbjct: 135 SSLAMVTIALCGSEVQKQKYLPSLAQLTAVGCWALTEPNHGSD 177
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 209 KREYCPTTLSPTRVSCWLLTSPVWGSD 129
K++Y P+ + CW LT P +GSD
Sbjct: 128 KQKYLPSLTQFRTIGCWALTEPDYGSD 154
>03_06_0326 +
33150599-33150907,33151013-33151104,33151961-33152057,
33152585-33152656,33152750-33152812,33152905-33153045,
33153603-33153698,33154120-33154404,33154692-33154851,
33154947-33155089,33155688-33155861,33156386-33156652,
33156737-33156856
Length = 672
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 439 RRRLTKLRDRNPSERHEQQRLSGLQERSQ-RNEPRARR 329
RRR + R R+PS+ E SG RS+ RN ++RR
Sbjct: 13 RRRRRRQRSRSPSDSEEASDSSGSPRRSRSRNRRKSRR 50
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = +2
Query: 104 TTPASPTACQTPTPATSRA--STRP 172
TTP PT+C +PT +TS + +TRP
Sbjct: 137 TTPWLPTSCSSPTSSTSPSARATRP 161
>03_01_0373 -
2904914-2904949,2905030-2905144,2906446-2906534,
2906670-2906889,2907921-2907985,2908619-2908879,
2909204-2909417,2910643-2910698,2910891-2910947,
2911043-2911115,2912711-2913225
Length = 566
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = -1
Query: 451 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARR 272
S +ERR + RDR+ +R +++ +ER R+ + + + ERE ++R +R
Sbjct: 88 SSRERRDRDRDRDRDEKDREKERDKD--KERRSRDREKEKEKEKEREREREKDRERRSRS 145
Query: 271 R 269
R
Sbjct: 146 R 146
>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = -1
Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR* 266
KE+ TK D E+ ++ R N+ RR P+ CV E GP +R
Sbjct: 1774 KEKETATKKEDERDGEKKNGAQMF---TRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRF 1830
Query: 265 IQS 257
+ S
Sbjct: 1831 VYS 1833
>02_05_0288 -
27549718-27549940,27550025-27550102,27550282-27550674,
27550752-27551347,27552232-27552978
Length = 678
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 113 ASPTACQTPTPATSRASTRPASVT 184
A+ AC T T AT+R++TRP T
Sbjct: 60 ATAVACTTTTTATTRSATRPRKRT 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,330,859
Number of Sequences: 37544
Number of extensions: 192860
Number of successful extensions: 924
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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