Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_N07
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.067
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.067
SB_45809| Best HMM Match : Vicilin_N (HMM E-Value=4.5) 33 0.21
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_12095| Best HMM Match : Vicilin_N (HMM E-Value=0.083) 32 0.36
SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 31 0.83
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13) 29 2.5
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 29 2.5
SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4) 29 3.4
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 29 4.4
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 28 5.9
SB_1172| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_56025| Best HMM Match : Keratin_B2 (HMM E-Value=0.4) 28 7.7
SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 28 7.7
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 28 7.7
SB_58222| Best HMM Match : HS1_rep (HMM E-Value=0) 28 7.7
SB_36320| Best HMM Match : LUC7 (HMM E-Value=0.083) 28 7.7
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 28 7.7
SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 34.7 bits (76), Expect = 0.067
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Frame = -1
Query: 424 KLRDRNPSERHEQQRLSGLQE---RSQRNEPRARRPQSGPEREC---VQERGPCARRR*I 263
K R+R ER +QQ+L +E R Q+ E + RR + ++ QER A++
Sbjct: 184 KRREREQKEREKQQKLDMEKEERRRRQQEEEKKRREEEEKRKKVEKEKQEREKAAKKNIK 243
Query: 262 QSEHQQRSRQCA*YRQIP 209
+ + QQR+ Q R+IP
Sbjct: 244 RQQQQQRTDQQQYPREIP 261
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -1
Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQ--ERGPCARR 272
K + K + R E +Q+RL + RSQ NE R RR + ERE Q + RR
Sbjct: 149 KRKEEEEKEKQRKQLEVEKQKRLEEERIRSQ-NEERKRREREQKEREKQQKLDMEKEERR 207
Query: 271 R*IQSEHQQRSRQCA*YRQIPRE 203
R Q E ++R + +++ +E
Sbjct: 208 RRQQEEEKKRREEEEKRKKVEKE 230
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 34.7 bits (76), Expect = 0.067
Identities = 25/73 (34%), Positives = 32/73 (43%)
Frame = -1
Query: 451 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARR 272
SP+ RRR D +P R E R R + E R RR S P R+ + P RR
Sbjct: 832 SPRRRRRSASGSDSSPHRRSESPR----DRRRRSPEHRRRREASPPRRDRKRYDSPPRRR 887
Query: 271 R*IQSEHQQRSRQ 233
R S +R R+
Sbjct: 888 RRSPSPPPRRRRR 900
>SB_45809| Best HMM Match : Vicilin_N (HMM E-Value=4.5)
Length = 215
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRAR 332
+ERRR +K RDR+ R +R S ER R + R+R
Sbjct: 33 RERRRRSKSRDRDSRSRTSSRRRSRSSERRHRKDDRSR 70
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRAR 332
+ERRR +K RDR+ R +R S ER R + R+R
Sbjct: 1603 RERRRRSKSRDRDSRSRTSSRRRSRSSERRHRKDDRSR 1640
>SB_12095| Best HMM Match : Vicilin_N (HMM E-Value=0.083)
Length = 501
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = -1
Query: 439 RRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCAR 275
RRRL L++ + E+Q + +QER++++ RAR + +R+ ++E C R
Sbjct: 302 RRRLKALQEAEQALEEERQCRTKMQERAEQSVERAREEMTDWKRQ-IEELSGCCR 355
>SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 31.5 bits (68), Expect = 0.63
Identities = 16/71 (22%), Positives = 42/71 (59%)
Frame = -1
Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR* 266
+++++L + + + P + +QQ+ L+++ Q+ +PR ++ Q P + Q++ P +++
Sbjct: 60 QQQQQLQQQQQQQPRLQQQQQQQPRLKQQQQQ-QPRLKQQQQQPRLKQQQQQQPRLKQQQ 118
Query: 265 IQSEHQQRSRQ 233
Q QQ+ +Q
Sbjct: 119 QQPRLQQQQQQ 129
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 31.1 bits (67), Expect = 0.83
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = -1
Query: 448 PKERRRLTKLRDRNPS----ERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPC 281
PKE R R R PS +RHE +R G E +R + RR ER+ + R
Sbjct: 1595 PKEEPRQGTERRREPSLRHDDRHEDRRSEGRPEDYERRDEERRRE---AERKGERPREEF 1651
Query: 280 ARRR*IQSEHQQRS-RQCA*YRQIPREST 197
R+ S+ QRS R+ Y + RE +
Sbjct: 1652 ERKSERSSQRSQRSLREGERYYEERREES 1680
>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -1
Query: 439 RRRLTKLRDRNPS--ERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR* 266
R R TK + ++PS R + R S ER R R+R P+S R + RRR
Sbjct: 312 RERNTKRKSKSPSLERRRSRARRSRSIERRDRRRSRSRSPRSSLGRSRRRSSSRNRRRRR 371
Query: 265 IQSEHQQRSR-QCA*YRQIPREST 197
+S+ ++ QC +++ R +
Sbjct: 372 SRSKSPLNTKSQCEKEQRVSRSKS 395
>SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 409 NPSERHEQQRLSGLQERSQRNEPRARRPQSGP 314
NPS++ +++ + E +R EP P++GP
Sbjct: 397 NPSQKKDEEEMEEEDEEEEREEPDEPEPETGP 428
>SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = -1
Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQE--RSQRNEPRARRPQSGPERECVQER 290
++++R + +DR+ + E ++ S +E R +R+E R +RP+S ERE ++R
Sbjct: 229 EDKKREEEKKDRDKDKDREDRKSSSSRESKRERRSEEREKRPRS-RERERSRDR 281
>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
Length = 1072
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = -1
Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR* 266
KE+ R K R+R +R +++ + ++ R R+ RAR P G R + P +RRR
Sbjct: 1004 KEQER-EKERERLREQREKEREETRMRARD-RSGDRARSPPRGRARS----KSPVSRRRA 1057
Query: 265 IQSEHQQRSR 236
S + RSR
Sbjct: 1058 SPSRSRSRSR 1067
>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 794
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/82 (26%), Positives = 35/82 (42%)
Frame = -1
Query: 442 ERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR*I 263
ER+R K R+R E++R + +R R R + ERE +ER R
Sbjct: 205 ERQR-EKERERERERERERERERERERERERERERERERERERERERERERERERERERE 263
Query: 262 QSEHQQRSRQCA*YRQIPREST 197
+ ++R R+ Y + ST
Sbjct: 264 RERERERERERKRYACVSETST 285
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 101 ATTPASPTACQTPTPATSRASTRPASV 181
A PA+P+A P P S ST P+SV
Sbjct: 114 APAPAAPSAAAAPAPVRSVPSTSPSSV 140
>SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -1
Query: 403 SERHEQQRLSGLQERSQRNEPRARRPQSGPER 308
SER ++R SGLQERS+ R+R P+ R
Sbjct: 203 SERTRKRRHSGLQERSRDRIARSRSPRRSRAR 234
>SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4)
Length = 426
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -1
Query: 442 ERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR*I 263
ER+R + L R+ SER R+S RS + + R P R +R AR R
Sbjct: 47 ERKRPSSL-GRDSSERRPSARVSSDNSRSPPHRRDSSRRSHSPSRRSSDDRSTDARDRRD 105
Query: 262 QSEHQQRSRQ 233
+ R R+
Sbjct: 106 RRRSSSRERR 115
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = -1
Query: 451 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARR 272
SP++R R + R+P +R R +RS+ R+R P+ G + R P RR
Sbjct: 196 SPRKRSRSPRKMLRSPRKRSRTPR-----KRSRSPRKRSRSPRKGSHTPKKRSRSP--RR 248
Query: 271 R*IQSEHQQRSR 236
H++RSR
Sbjct: 249 N--SQRHKERSR 258
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/84 (23%), Positives = 34/84 (40%)
Frame = -1
Query: 451 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARR 272
SP++R R + R R+P +R R + + PR R Q ER +R
Sbjct: 210 SPRKRSRTPRKRSRSPRKRSRSPRKGSHTPKKRSRSPR-RNSQRHKERSRYHRSRSRSRH 268
Query: 271 R*IQSEHQQRSRQCA*YRQIPRES 200
R +S + +++ R+S
Sbjct: 269 RRSRSNSPSMRKSDRKFKKSQRKS 292
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/62 (20%), Positives = 34/62 (54%)
Frame = -1
Query: 418 RDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR*IQSEHQQRS 239
R ++ +QQ+ Q++ Q+ + + ++PQ +++ QE+ +++ Q + QQ+
Sbjct: 12 RGSTKQQQQQQQQQQQQQQQQQQQQQQQQQPQPQQQQQQQQEQEQQQQQQQQQQQQQQQQ 71
Query: 238 RQ 233
+Q
Sbjct: 72 QQ 73
>SB_540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -1
Query: 451 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQER 290
S E+R K + R ++ +Q+R +++ R E R RR + + E +ER
Sbjct: 79 SDSEKRPKGKEKSRKDADDSDQERDRSKRDKKDRKEKRDRRSKERSKDESKEER 132
>SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -1
Query: 442 ERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR*I 263
ER+R + L R+ SER R+S RS + + R P R +R AR R
Sbjct: 47 ERKRPSSL-GRDSSERRPSVRVSSDNSRSPPHRRDSSRRSHSPSRRSSDDRSTDARDRRD 105
Query: 262 QSEHQQRSRQ 233
+ R R+
Sbjct: 106 RRRSSSRERR 115
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 451 SPKERRRLTKLRDRNPSERHEQQRL-SGLQERSQRNEPRARRPQSGPERECVQER 290
SP R ++ R R+P RH + R + + RS+ + P ++ + ++E ++R
Sbjct: 250 SPHHRSHRSRSRSRSPRRRHSRSRSPTHRRHRSRSHSPEKKKHKKKEKKEKDEKR 304
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -1
Query: 451 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERG 287
SP+ R R R R+P ++ R G ++R R+ R R G +R+ +++G
Sbjct: 448 SPRRRSRSPGHRSRSPRRGRDRDRDRG-RDRRDRDRDRDRDRDRGRDRDRDKDKG 501
>SB_1172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/69 (17%), Positives = 38/69 (55%)
Frame = -1
Query: 439 RRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR*IQ 260
+RR+T + ++ +QQ+ Q++ Q+ + + ++ Q +++ +++ +++ Q
Sbjct: 25 KRRVTAAPSKTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQQQQQQQQQQQQ 84
Query: 259 SEHQQRSRQ 233
+ QQ+ +Q
Sbjct: 85 QQRQQQQQQ 93
>SB_56025| Best HMM Match : Keratin_B2 (HMM E-Value=0.4)
Length = 187
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 101 ATTPASPTACQTPTPATSRASTR-PASVTA**DSTLS 208
A T PT TPT AT ST P+ VT D LS
Sbjct: 115 APTTTKPTTATTPTSATKGLSTEGPSPVTKGVDGALS 151
>SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 583
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 424 KLRDRNPSERHEQQRLSGLQERSQRNEPRARRP-QSGPERECVQERGPCARRR*IQSEHQ 248
+L + P E + S +ERSQ +RP + +E QE+ +R + H+
Sbjct: 425 RLEEERPEEERTHEERSH-KERSQEKRSHEKRPHEERSHKERSQEKRSHEKRPHEERSHE 483
Query: 247 QRSRQ 233
+RS +
Sbjct: 484 ERSEE 488
>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3464
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 109 TSFSYGVSDPHTGDVKSQHETRVGDSVVGQYSLLES 216
TS + +SD H+G + + + ++GDS + + S + S
Sbjct: 2740 TSIAEELSDRHSGSSEVEEDIKIGDSSISEASEIRS 2775
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -1
Query: 418 RDRNPSERHEQQRLSGLQ---ERSQRNEPRARRPQSGPERECVQERGPCARRR*IQSEHQ 248
RDRN + ++++R + E+ +R++ R + + ERE +ER R +S H+
Sbjct: 613 RDRNREKENDREREKEREKEKEKEERDKEREKEKEKEKEREKEKEREREKERDRDKSSHK 672
Query: 247 QR 242
+R
Sbjct: 673 KR 674
>SB_58222| Best HMM Match : HS1_rep (HMM E-Value=0)
Length = 727
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Frame = -1
Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRN--------EPRARRPQSGPERECVQER 290
K+RR+ + R+R ++R ++ + E S+R E ARR Q ERE + R
Sbjct: 394 KQRRQAKEQREREAAQRRQEMEAAKDAEASEREAEAERAAAEDEARRQQEEAEREAEEAR 453
>SB_36320| Best HMM Match : LUC7 (HMM E-Value=0.083)
Length = 216
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQE-RSQRNEPRARRPQSGPERECVQERGPCAR 275
+++RR + R+R R +R SG ++ RS R+ R RR +S + R AR
Sbjct: 107 RQKRREEREREREQERREMDKRRSGDRDRRSSRDADRGRRRRSRSRSRDHKRRSLLAR 164
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/79 (29%), Positives = 33/79 (41%)
Frame = -1
Query: 439 RRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR*IQ 260
R+R KLR R R +R+ + R +R + RR + R P RRR
Sbjct: 359 RKRARKLRRRRNRRRRRLRRIRRRRRRRRRRRRKLRRR---------RRRRPLRRRRRRG 409
Query: 259 SEHQQRSRQCA*YRQIPRE 203
++R RQ +PRE
Sbjct: 410 GRRRRRGRQGRGGYDLPRE 428
>SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1329
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -1
Query: 412 RNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERE 305
RNPS R + R SGL Q RR QS RE
Sbjct: 424 RNPSPRSARHRFSGLLRTVQATVRTERRAQSQLPRE 459
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,381,362
Number of Sequences: 59808
Number of extensions: 238777
Number of successful extensions: 1312
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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