Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_N07
(661 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 32 0.31
U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying defe... 31 0.72
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe... 31 0.72
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 31 0.72
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 31 0.72
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 31 0.72
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 30 1.3
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 30 1.7
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 30 1.7
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 30 1.7
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 29 2.2
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 29 2.2
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CT... 29 2.9
AC006772-2|AAF60609.2| 341|Caenorhabditis elegans Hypothetical ... 29 2.9
Z92829-4|CAD54131.1| 569|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical pr... 28 6.8
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 6.8
U80029-11|AAB37590.1| 155|Caenorhabditis elegans Hypothetical p... 28 6.8
U58727-1|AAB00581.1| 358|Caenorhabditis elegans Hypothetical pr... 28 6.8
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 6.8
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 6.8
Z83230-10|CAL22704.2| 714|Caenorhabditis elegans Hypothetical p... 27 8.9
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr... 27 8.9
U80454-4|AAB37876.3| 896|Caenorhabditis elegans Prion-like-(q/n... 27 8.9
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 27 8.9
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 27 8.9
AL021481-9|CAA16332.3| 714|Caenorhabditis elegans Hypothetical ... 27 8.9
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina... 27 8.9
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 27 8.9
AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical ... 27 8.9
AC024869-4|ABB51173.1| 285|Caenorhabditis elegans Hypothetical ... 27 8.9
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 32.3 bits (70), Expect = 0.31
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = -1
Query: 451 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRAR--RPQSGPERECVQERGPC- 281
SP++R R R R ++R+S R R+ PR + R +S P R + R P
Sbjct: 99 SPRKRSRSPPRRTRRSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQRSRSPPP 158
Query: 280 ARRR*IQSEHQQRSRQCA*YRQIPREST 197
A+RR QS + R+ YRQ R +
Sbjct: 159 AKRRRDQSRSKSPPRRN--YRQRQRSGS 184
Score = 31.1 bits (67), Expect = 0.72
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = -1
Query: 451 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARR 272
SP RRR R R+ S +R R + + RR +S P R+ + R P RR
Sbjct: 90 SPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRR 149
Query: 271 R 269
+
Sbjct: 150 Q 150
>U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying
defective protein 27,isoform c protein.
Length = 612
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 397 RHEQQRLSGLQERSQRNEPRARRPQSGPERECVQER 290
+ +QQ+ Q ++QR++ R RR + ERE +ER
Sbjct: 468 QQQQQQQQAAQAQAQRDQERERREREAREREAARER 503
>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defective
protein 27,isoform b protein.
Length = 1124
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 397 RHEQQRLSGLQERSQRNEPRARRPQSGPERECVQER 290
+ +QQ+ Q ++QR++ R RR + ERE +ER
Sbjct: 980 QQQQQQQQAAQAQAQRDQERERREREAREREAARER 1015
>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defective
protein 27,isoform a protein.
Length = 1129
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 397 RHEQQRLSGLQERSQRNEPRARRPQSGPERECVQER 290
+ +QQ+ Q ++QR++ R RR + ERE +ER
Sbjct: 985 QQQQQQQQAAQAQAQRDQERERREREAREREAARER 1020
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 31.1 bits (67), Expect = 0.72
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -1
Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRAR-RPQSGPERECVQERGPCARRR 269
++RRR ++ RDR+ R ++ R ++R RN+ R R R + E V + + R
Sbjct: 106 RDRRRRSRSRDRDGGRRRDRSR---SRDRRDRNDDRKRDRNEDSDNEEDVSKMADAVKDR 162
Query: 268 *IQSEHQQRSR 236
+ + +++ R
Sbjct: 163 YLGKQKEKKKR 173
>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
Length = 1129
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 397 RHEQQRLSGLQERSQRNEPRARRPQSGPERECVQER 290
+ +QQ+ Q ++QR++ R RR + ERE +ER
Sbjct: 985 QQQQQQQQAAQAQAQRDQERERREREAREREAARER 1020
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = -1
Query: 451 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARR-PQSGP-ERECVQERGPCA 278
SP + + R R+PS+ + R S+ PR RR P + P R+ Q R
Sbjct: 442 SPSQSKSPAPRRRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPR 501
Query: 277 RRR*IQSEHQQRS 239
RRR S + RS
Sbjct: 502 RRRSPSSSSRSRS 514
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -1
Query: 448 PKERRRLTKLRDRNPSERHEQQRLSG--LQERSQRNEPRARRPQSGPERECVQERGPCAR 275
P RRR + + ++P+ + + R R +R+ ++ P P+R + + P AR
Sbjct: 315 PPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPAR 374
Query: 274 RR 269
RR
Sbjct: 375 RR 376
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 451 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQ-RNEPRARRPQSGPERECVQERGPCAR 275
SP+ R R + R R P R + R RS+ R+ R+R P R + R P +
Sbjct: 86 SPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRS-ESRSPSPK 144
Query: 274 R 272
R
Sbjct: 145 R 145
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 451 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQ-RNEPRARRPQSGPERECVQERGPCAR 275
SP+ R R + R R P R + R RS+ R+ R+R P R + R P +
Sbjct: 86 SPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRS-ESRSPSPK 144
Query: 274 R 272
R
Sbjct: 145 R 145
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 451 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQ-RNEPRARRPQSGPERECVQERGPCAR 275
SP+ R R + R R P R + R RS+ R+ R+R P R + R P +
Sbjct: 86 SPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRS-ESRSPSPK 144
Query: 274 R 272
R
Sbjct: 145 R 145
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -1
Query: 436 RRLTKLRDRNPS----ERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGP 284
RR ++ RDR S R + S ++E +R+E R+ P+ +RE + R P
Sbjct: 103 RRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRDLKREASRSRSP 157
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 29.5 bits (63), Expect = 2.2
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = -1
Query: 451 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARR 272
S E R L K PSE E+++ S +ER + PR RR ++ R R
Sbjct: 124 SKAESRPLRKRISPPPSENREKEKQSRDKERRRSRSPRDRRGRATTSRS--GRTSSSDRD 181
Query: 271 R*IQSEHQQRSRQCA*YRQIPRES 200
R + + RSR + R P +S
Sbjct: 182 RHSKRRSRSRSRSSSGSRTPPYKS 205
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -1
Query: 448 PKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARR-PQSGPERECVQERGPCARR 272
P+E RR + R +R +++R S R +R P R + PER Q+R P R
Sbjct: 267 PREDRRRSVERQDQREDRRDRRR-SPEDPRERRRSPEDRTVRRRSPERR-RQQRSPSVER 324
Query: 271 R*IQSEHQQRSRQ 233
R +R R+
Sbjct: 325 RKSPQRRDERRRR 337
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
protein T23F1.5 protein.
Length = 1262
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +2
Query: 110 PASPTACQ-TPTPATSRASTRP-ASVT 184
P P Q TPTP TS STRP ASVT
Sbjct: 671 PLHPETSQSTPTPTTSARSTRPTASVT 697
>Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical
protein F58G11.5 protein.
Length = 675
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = -1
Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR* 266
KE ++ K+R + Q+ L+E S+ +R P +R R P RRR
Sbjct: 485 KEEDQIEKIRKCVDAYYASQEPPENLREDSEARRSNSRSPPRDHKRSRSPSRSPSPRRRQ 544
Query: 265 IQSEHQQRS 239
S + RS
Sbjct: 545 RSSSNSSRS 553
>AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CTD
associated factor 6 protein.
Length = 675
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = -1
Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR* 266
KE ++ K+R + Q+ L+E S+ +R P +R R P RRR
Sbjct: 485 KEEDQIEKIRKCVDAYYASQEPPENLREDSEARRSNSRSPPRDHKRSRSPSRSPSPRRRQ 544
Query: 265 IQSEHQQRS 239
S + RS
Sbjct: 545 RSSSNSSRS 553
>AC006772-2|AAF60609.2| 341|Caenorhabditis elegans Hypothetical
protein Y46D2A.1 protein.
Length = 341
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 104 TTPASPTACQTPTPATSRASTRPAS 178
+TP++P+ +T P+T+R ST P++
Sbjct: 299 STPSTPSTVETTMPSTTRISTTPSA 323
>Z92829-4|CAD54131.1| 569|Caenorhabditis elegans Hypothetical
protein F10A3.4 protein.
Length = 569
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 104 TTPASPTACQTPTPATSRASTRPASVT 184
TT + T QTP P T+ +TRPA T
Sbjct: 473 TTLPTTTTTQTPLPTTTILTTRPALTT 499
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 406 PSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQE-RGPCARRR*IQSEHQQRSR 236
P R QR ++ QR+ RR P+++ ++ R ARRR H+ R R
Sbjct: 336 PKRRQSPQRRPEVKRSHQRSPSPRRRRSPSPKKDKKRDYRREPARRRRSSDNHRDRDR 393
>Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical
protein F53B6.2b protein.
Length = 711
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 267 QRRRAQGPRSCTHSRSGPLCGRRALGSFRCDLSCSPLSRCC 389
Q RR R+C P C A ++ D SC SR C
Sbjct: 641 QMRRPHSARACVADEPLPPCMPTASALYQRDASCQDQSRFC 681
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical protein
F53B6.2a protein.
Length = 1045
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 267 QRRRAQGPRSCTHSRSGPLCGRRALGSFRCDLSCSPLSRCC 389
Q RR R+C P C A ++ D SC SR C
Sbjct: 975 QMRRPHSARACVADEPLPPCMPTASALYQRDASCQDQSRFC 1015
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 406 PSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQE-RGPCARRR*IQSEHQQRSR 236
P R QR ++ QR+ RR P+++ ++ R ARRR H+ R R
Sbjct: 336 PKRRQSPQRRPEVKRSHQRSPSPRRRRSPSPKKDKKRDYRREPARRRRSSDNHRDRDR 393
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 406 PSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQE-RGPCARRR*IQSEHQQRSR 236
P R QR ++ QR+ RR P+++ ++ R ARRR H+ R R
Sbjct: 267 PKRRQSPQRRPEVKRSHQRSPSPRRRRSPSPKKDKKRDYRREPARRRRSSDNHRDRDR 324
>Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical
protein F15D4.4 protein.
Length = 608
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 89 ARFMATTPAS-PTACQTPTPATSRASTRPASVT 184
A+ T P + PT+ QT TP T+ +T P T
Sbjct: 83 AQIQTTIPTTTPTSTQTTTPTTTTITTTPVPTT 115
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Frame = +2
Query: 104 TTPASPTAC-QTPTPATSRAST----RPASV 181
T PA+P+A Q PTPA++ AST PASV
Sbjct: 605 TQPATPSASNQPPTPASASASTTLHVEPASV 635
>U80029-11|AAB37590.1| 155|Caenorhabditis elegans Hypothetical
protein T20D4.7 protein.
Length = 155
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 136 PHTGDVKSQHETRVGDSVVGQYSLLESDGTKRTVDYAADAHSGFN--AVVRK 285
PH K + T+ G S + +++ DGT+ T D D G N A++ K
Sbjct: 101 PHGNGAKQKLSTKYGVSGIPALIIVKPDGTEITRDGRKDVQMGTNPKAIIAK 152
>U58727-1|AAB00581.1| 358|Caenorhabditis elegans Hypothetical
protein D1005.3 protein.
Length = 358
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = -1
Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR 269
K R++ +L+D+ +E + +R E ++E ARR + ++ +GP +R
Sbjct: 288 KSRKKAKELQDKKEAEHDKMKRRIAELEGLLQSERDARRRDQDTLEQLLRNKGPMKEQR 346
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARR 272
K+R++ + R+R+ R + R ++R + E R RR +S P R + G RR
Sbjct: 78 KDRKKKDRSRERDRERRSSRSRSRSPRDRDR--ERRRRRSRSPPPRRRSRSGGDRRRR 133
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARR 272
K+R++ + R+R+ R + R ++R + E R RR +S P R + G RR
Sbjct: 78 KDRKKKDRSRERDRERRSSRSRSRSPRDRDR--ERRRRRSRSPPPRRRSRSGGDRRRR 133
>Z83230-10|CAL22704.2| 714|Caenorhabditis elegans Hypothetical
protein Y43F4B.3 protein.
Length = 714
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/84 (22%), Positives = 36/84 (42%)
Frame = -1
Query: 448 PKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR 269
P+E +RL + R + ++ + R + E + RAR+ Q P P +R
Sbjct: 73 PEETQRLRQRRRISATDATQSSRTMNVIEDRKPRVNRARKSQDAPSTSTCGFETPVGTKR 132
Query: 268 *IQSEHQQRSRQCA*YRQIPREST 197
++ Q+ + + R+I ST
Sbjct: 133 KSKAADSQKPPKQSKLRKIDEAST 156
>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
protein K03H1.2 protein.
Length = 1131
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 418 RDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPER 308
RDR+ SER E G ++RS PR + P + P R
Sbjct: 101 RDRDRSERREPSSRRGWKDRSGDQTPRFKVPDT-PSR 136
>U80454-4|AAB37876.3| 896|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 66
protein.
Length = 896
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 421 LRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQ 296
+R PS+R +Q + ++ +N+P A+ QS P Q
Sbjct: 569 VRKHTPSKRKDQNDPNAQNAQNGKNDPNAQNAQSDPNAHNAQ 610
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = -1
Query: 433 RLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR*IQSE 254
R+ + R R+PS + ++R + R + PR RP+S P+R + R + +S+
Sbjct: 149 RVERKRRRSPSPK--RRRRPSEKPRKRSRSPRRERPRS-PKRSREESRKLSRKPSSSRSK 205
Query: 253 HQQRSRQ 233
+RSR+
Sbjct: 206 SPRRSRE 212
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = -1
Query: 433 RLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR*IQSE 254
R+ + R R+PS + ++R + R + PR RP+S P+R + R + +S+
Sbjct: 149 RVERKRRRSPSPK--RRRRPSEKPRKRSRSPRRERPRS-PKRSREESRKLSRKPSSSRSK 205
Query: 253 HQQRSRQ 233
+RSR+
Sbjct: 206 SPRRSRE 212
>AL021481-9|CAA16332.3| 714|Caenorhabditis elegans Hypothetical
protein Y43F4B.3 protein.
Length = 714
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/84 (22%), Positives = 36/84 (42%)
Frame = -1
Query: 448 PKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR 269
P+E +RL + R + ++ + R + E + RAR+ Q P P +R
Sbjct: 73 PEETQRLRQRRRISATDATQSSRTMNVIEDRKPRVNRARKSQDAPSTSTCGFETPVGTKR 132
Query: 268 *IQSEHQQRSRQCA*YRQIPREST 197
++ Q+ + + R+I ST
Sbjct: 133 KSKAADSQKPPKQSKLRKIDEAST 156
>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
determination protein MOG-1 protein.
Length = 1131
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 418 RDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPER 308
RDR+ SER E G ++RS PR + P + P R
Sbjct: 101 RDRDRSERREPSSRRGWKDRSGDQTPRFKVPDT-PSR 136
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 98 MATTPASPTACQTPTPATSRASTRPASVT 184
M TTP PT T TPA ++AS PA+ T
Sbjct: 801 MPTTPEPPTISSTFTPAATQAS--PATPT 827
>AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical
protein Y75B7AL.4a protein.
Length = 1126
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 89 ARFMATTPASPTACQTPTPATSRASTRPASVTA 187
A F +T S + T TP TSR ST A+ A
Sbjct: 1088 AAFSESTSDSALSTPTATPTTSRVSTNDAAAAA 1120
>AC024869-4|ABB51173.1| 285|Caenorhabditis elegans Hypothetical
protein Y75B7AL.4b protein.
Length = 285
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 89 ARFMATTPASPTACQTPTPATSRASTRPASVTA 187
A F +T S + T TP TSR ST A+ A
Sbjct: 247 AAFSESTSDSALSTPTATPTTSRVSTNDAAAAA 279
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,246,245
Number of Sequences: 27780
Number of extensions: 158357
Number of successful extensions: 979
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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