Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_N07
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.12 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    24   1.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   3.4  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   3.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   3.4  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   4.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/47 (25%), Positives = 29/47 (61%)
 Frame = -1

Query: 424  KLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGP 284
            K + + P ++ +QQ+    Q++SQ  +P+ ++PQ   +++  Q++ P
Sbjct: 1499 KTQQQQPQQQQQQQQQQQPQQQSQ--QPQQQQPQPQQQQQQQQQQQP 1543



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -1

Query: 367 QERSQRNEPRARRPQSGPERECVQERGP 284
           Q++ Q+ +P+ ++ Q   +++  Q+RGP
Sbjct: 833 QQQQQQQQPQQQQQQQQQQQQ--QQRGP 858


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 318 PLCGRRALGSFRCDLSCSPLSRCCS 392
           P CG   +  F CD+S S LS  C+
Sbjct: 47  PFCGPNVINPFFCDMSPS-LSLLCA 70


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 103 DYTSFSYGVSDPHTGDVKSQHETRVGDSVVGQYSL 207
           DY +F   ++  HT D +S  + RV   VV Q  +
Sbjct: 294 DYQAFLKHLNTEHTLDDRSTAQARVRMQVVSQLEI 328


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = -1

Query: 439 RRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECV 299
           R+R ++ R+R  +    ++     +ERS+      R  +   ER+ +
Sbjct: 36  RKRYSRSREREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKII 82


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = -1

Query: 439 RRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECV 299
           R+R ++ R+R  +    ++     +ERS+      R  +   ER+ +
Sbjct: 36  RKRYSRSREREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKII 82


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 101 ATTPASPTACQTPT 142
           +TTPASPT    PT
Sbjct: 23  STTPASPTLSTPPT 36


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 318 PLCGRRALGSFRCDLS 365
           P CG   +  F CD+S
Sbjct: 46  PFCGPNVINPFFCDMS 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,728
Number of Sequences: 438
Number of extensions: 2036
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)