Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_N07
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical ...    32   0.39 
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   1.6  
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar...    30   1.6  
At1g28420.1 68414.m03494 homeobox transcription factor, putative...    29   2.1  
At2g27285.1 68415.m03279 expressed protein weak similarity to ma...    29   2.7  
At5g37010.1 68418.m04438 expressed protein                             29   3.6  
At4g15180.1 68417.m02328 SET domain-containing protein contains ...    29   3.6  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    28   4.8  
At2g19710.1 68415.m02303 expressed protein   contains Pfam profi...    28   6.3  

>At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical to
           Short-chain acyl CoA oxidase [Arabidopsis thaliana]
           GI:5478795; contains InterPro entry IPR006089: Acyl-CoA
           dehydrogenase
          Length = 436

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 236 TVRLVPSDSKRE-YCPTTLSPTRVSCWLLTSPVWGSD 129
           T+ L  S++++E Y P+      V+CW LT P  GSD
Sbjct: 146 TIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSD 182


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = -1

Query: 451 SPKERRRLTKL----RDRNPSERHEQQRLSGLQERSQRNEPRARRPQS-GPERECVQERG 287
           SP  RRR +      R R+P+    Q+R      R  R+ P ARR +S  P     +   
Sbjct: 324 SPPARRRRSPSPPARRHRSPTPPARQRRSPSPPARRHRSPPPARRRRSPSPPARRRRSPS 383

Query: 286 PCARRR*IQSEHQQRSR 236
           P ARRR   S   +R+R
Sbjct: 384 PPARRRRSPSPLYRRNR 400


>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
           RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1166

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -1

Query: 445 KERRRLTKLRDRNPSERHE-QQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR 269
           +ERRR  K R +  SER +       ++E  +R++ R    + G  RE  ++RG   +R 
Sbjct: 79  RERRRRDKDRVKRRSERRKSSDSEDDVEEEDERDKRRVNEKERG-HREHERDRGKDRKRD 137

Query: 268 *IQSEHQQRSRQ 233
             + E + + R+
Sbjct: 138 REREERKDKERE 149



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -1

Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPER--ECVQERGPCARR 272
           KER      RDR    + +++R     +  +R + R RR +   ER  E V+ER    RR
Sbjct: 119 KERGHREHERDRGKDRKRDREREERKDKEREREKDRERREREREEREKERVKER---ERR 175

Query: 271 R*IQSEHQQRSRQ 233
                E  +R R+
Sbjct: 176 EREDGERDRRERE 188



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = -1

Query: 445 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR* 266
           KER +  + R+R   ER  ++R    +  S+RN  R R  + G E      +    RRR 
Sbjct: 166 KERVKERERREREDGERDRREREK--ERGSRRNRERERSREVGNEESDDDVKRDLKRRRK 223

Query: 265 IQSEHQQRSRQ 233
              E +++ R+
Sbjct: 224 EGGERKEKERE 234


>At1g28420.1 68414.m03494 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7 GI:19486
           [Lycopersicon peruvianum]
          Length = 1703

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -1

Query: 418 RDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR*IQSEHQQRS 239
           R     E H  + L  L+ + ++NE R R+     ERE  +E     R R  + E  QR 
Sbjct: 370 RGSETRENHGPKDLEKLEIQRKKNEERMRKEMERNERERRKEEERLMRERIKEEERLQRE 429

Query: 238 RQ 233
           ++
Sbjct: 430 QR 431


>At2g27285.1 68415.m03279 expressed protein weak similarity to maebl
           (GI:20087019) [Plasmodium falciparum], chimeric
           erythrocyte-binding protein MAEBL (GI:22086284)
           [Plasmodium falciparum]
          Length = 323

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -1

Query: 442 ERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERG 287
           E +   KL ++  +E+ E+QR +   E  ++   R  + +  PE+E   + G
Sbjct: 193 EAKEAEKLEEQRKAEKLEEQRKAEKLEELRKEVTRVEKKRKSPEKEVSPDSG 244


>At5g37010.1 68418.m04438 expressed protein
          Length = 637

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 451 SPKERRRLTKLRDRNPSERHEQQRLSGLQER-SQRNEPRARRPQSGPER 308
           SP+ERRR T  R+R+ S+ +     SG +ER S  N   +RR    P R
Sbjct: 176 SPRERRRRTPSRERDDSKSNR----SGSRERGSSGNGGGSRRVSRSPGR 220


>At4g15180.1 68417.m02328 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 2326

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = -1

Query: 451 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARR 272
           SP +R R  + RDR+P  R     +      +++  PR RR           E  P  R 
Sbjct: 431 SPHDRSRYHENRDRSPYARERSPYIFEKSSHARKRSPRDRRHHDYRRSPSYSEWSPHDRS 490

Query: 271 R 269
           R
Sbjct: 491 R 491


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 104 TTPASPTACQTPTPATSRASTRPA 175
           TTP++PT   T +PA +  +T PA
Sbjct: 33  TTPSAPTTSPTKSPAVTSPTTAPA 56


>At2g19710.1 68415.m02303 expressed protein   contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 937

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 352 RNEPRARRPQSGPERECVQERGPCARRR-*IQSEHQQRSRQ 233
           RNEP  RR +S  +RE   E     RR   +Q E   R+RQ
Sbjct: 358 RNEPSHRRDRSNAQRESFSEDHVSPRRNVRMQYEDMDRTRQ 398


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,665,878
Number of Sequences: 28952
Number of extensions: 145085
Number of successful extensions: 601
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)