Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_N05
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g42480.1 68414.m04898 expressed protein                             42   4e-04
At2g24510.1 68415.m02928 F-box family protein-related contains T...    29   3.6  
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    27   8.4  

>At1g42480.1 68414.m04898 expressed protein
          Length = 182

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
 Frame = +3

Query: 150 GVKYANRCEVCKILATELQNRL-EETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIES 326
           G    ++C  C  +A EL+ +L +E  + H  +    +    +  K   Y+ S+LR+++ 
Sbjct: 18  GSSVDDKCAACNAVAEELELQLLKEKPRNHLDMRNRLNSKGQREGKVIDYRISDLRVVDL 77

Query: 327 LEGVCDRILEYNIHKERSDSTRFAK 401
           L+G+CDR+ +Y + K    + ++ K
Sbjct: 78  LDGLCDRMQDYTLQKVEPKNRQWVK 102


>At2g24510.1 68415.m02928 F-box family protein-related contains
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           similar to  F-box protein family, AtFBX9 (GI:20197985)
           [Arabidopsis thaliana]
          Length = 281

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 482 QLQWYSEIHFYTFIYETVKGLKCLTHSFGKSCTIGP 375
           Q QW +E   Y F  +T + L   TH +G   + GP
Sbjct: 84  QKQWVAEFEIYEFGSDTWRVLDYFTHDYGVFSSGGP 119


>At5g15920.1 68418.m01862 structural maintenance of chromosomes
           (SMC) family protein (MSS2) similar to SMC-related
           protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
           Pfam profiles PF02483: SMC family C-terminal domain,
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = +3

Query: 174 EVCKILATELQNRLEETGKVH----EVIEIGYSLDDVQPKKKTKYQKSELRLIESLE 332
           E  K L TE +   EE  K+H    E++ + Y     + + +++YQ+ + +L ESLE
Sbjct: 639 ETHKSLQTEQRRLEEEAAKLHKEREEIVNVSYLEKKKRRELESRYQQRKTKL-ESLE 694


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,757,043
Number of Sequences: 28952
Number of extensions: 219728
Number of successful extensions: 671
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)