Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_N04
(860 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 36 5e-04
EU019710-1|ABU25222.1| 475|Tribolium castaneum dopa decarboxyla... 23 3.1
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 22 5.4
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 22 5.4
EF592537-1|ABQ95983.1| 593|Tribolium castaneum beta-N-acetylglu... 22 7.2
EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2 p... 22 7.2
AJ969955-1|CAI94742.1| 160|Tribolium castaneum torso-like prote... 22 7.2
AJ005422-1|CAA06528.1| 287|Tribolium castaneum caudal protein p... 22 7.2
EF222296-1|ABN79656.2| 403|Tribolium castaneum arginine vasopre... 21 9.5
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 35.5 bits (78), Expect = 5e-04
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 3/164 (1%)
Frame = +3
Query: 354 PGTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTS 533
PG ++ L C A+G+P P + W + + E N+ I T + S L +T +
Sbjct: 427 PGNSVFLKCIASGNPTPEITWELYGRRLS--NSERNQ-IGQYVTVNGDVVSHLNITAIHT 483
Query: 534 QD--VYTCLXXXXXXXXXXXXVVYNTDSATELSERAKLFPLKPRIVVSYSTYVDNIGNRV 707
D +Y C V + + + S R ++ L V S G +
Sbjct: 484 NDGGLYRC-------------VASSKVGSADHSARINVYGLP--FVRSMEKQAIVAGGTL 528
Query: 708 VLPCRVKGHPKPKITW-FNGQNVPIEKNPRMKVLRSGELVISSL 836
++ C GHP + W +G+ +PI N + KV +G L+I ++
Sbjct: 529 IVHCPFAGHPVDSVVWERDGRQLPI--NRKQKVFINGTLIIENV 570
Score = 34.3 bits (75), Expect = 0.001
Identities = 32/133 (24%), Positives = 52/133 (39%)
Frame = +3
Query: 357 GTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQ 536
G TC G+P ++ W K+ P+ + NE ++ RI S R +
Sbjct: 342 GRPATFTCNFEGNPIKTISWLKDGHPI-----DHNE-------AVLRIESV----RKEDK 385
Query: 537 DVYTCLXXXXXXXXXXXXVVYNTDSATELSERAKLFPLKPRIVVSYSTYVDNIGNRVVLP 716
+Y C + ++ EL + P P+I +++ GN V L
Sbjct: 386 GMYQCFIRNDQE---------SAEATAELKLGGRFEP--PQIRHAFNEETVQPGNSVFLK 434
Query: 717 CRVKGHPKPKITW 755
C G+P P+ITW
Sbjct: 435 CIASGNPTPEITW 447
Score = 29.5 bits (63), Expect = 0.036
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 3/144 (2%)
Frame = +3
Query: 366 IELTCEAAGSPAPSVHWFK-NDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQD- 539
+ L C A G P+PS W+K + + V N+ + +++ TLI+ +D
Sbjct: 250 VALLCPAQGFPSPSFRWYKFVEGTTRKQAVTLND-------RVKQVAGTLIIREAKVEDS 302
Query: 540 -VYTCLXXXXXXXXXXXXVVYNTDSATELSERAKLFPLKPRIVVSYSTYVDNIGNRVVLP 716
Y C+ V T L+ A PLK +I T + G
Sbjct: 303 GKYLCVVNNS---------VGGESVETVLTVTA---PLKAKIEPQVQTI--DFGRPATFT 348
Query: 717 CRVKGHPKPKITWFNGQNVPIEKN 788
C +G+P I+W + PI+ N
Sbjct: 349 CNFEGNPIKTISWLKDGH-PIDHN 371
Score = 28.7 bits (61), Expect = 0.062
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 342 YAHTPGTTIELTCEAAGSPAPSVHWFKND 428
+++T G +E C A G+P P + W ++D
Sbjct: 35 FSNTTGAVVE--CSAHGNPTPDIIWVRSD 61
Score = 27.9 bits (59), Expect = 0.11
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 708 VLPCRVKGHPKPKITWFNGQNVPIEKNPRMK-VLRSGELV 824
V+ C G+P P I W + P ++ VL +G LV
Sbjct: 42 VVECSAHGNPTPDIIWVRSDGTAVGDVPGLRQVLANGNLV 81
Score = 27.5 bits (58), Expect = 0.14
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +3
Query: 654 PRIVVSYS-TYVDNIGNRVVLPCRVKGHPKPKITW 755
P + S+ T+ V LPC G P P ITW
Sbjct: 1306 PAKIASFDDTFTTTYKEDVTLPCLAVGLPPPVITW 1340
Score = 26.6 bits (56), Expect = 0.25
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 603 TDSATELSERAKLF-PLKPRIVVSYSTYVDNIGNRVVLPCRVKGHPKPKITW 755
++SA+ + LF + PR ++ + G+ + C+ G P+P +TW
Sbjct: 681 SNSASVTTYTTSLFINVPPRWILEPTDKAFAQGSDAAVECKADGFPRPVVTW 732
Score = 22.6 bits (46), Expect = 4.1
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Frame = +3
Query: 705 VVLPCRVKGHPKPKITWF-----NGQNVPIEKNPRMKVLRSGELVISSLLWSDMDXY 860
V L C +G P P W+ + + N R+K + +G L+I D Y
Sbjct: 250 VALLCPAQGFPSPSFRWYKFVEGTTRKQAVTLNDRVKQV-AGTLIIREAKVEDSGKY 305
Score = 22.6 bits (46), Expect = 4.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 345 AHTPGTTIELTCEAAGSPAPSVHW 416
A G+ + C+A G P P V W
Sbjct: 709 AFAQGSDAAVECKADGFPRPVVTW 732
>EU019710-1|ABU25222.1| 475|Tribolium castaneum dopa decarboxylase
protein.
Length = 475
Score = 23.0 bits (47), Expect = 3.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 675 STYVDNIGNRVVLPCRVKGHPKPKI 749
S Y++NI +R VLP G+ +P I
Sbjct: 18 SGYLENIRDRRVLPTVEPGYLRPLI 42
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 22.2 bits (45), Expect = 5.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 361 VPGVCAYDGRGPCVIDKYL 305
VPGV A R PC I++ L
Sbjct: 197 VPGVVAMFSRKPCSINENL 215
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
CHS2 protein.
Length = 1464
Score = 22.2 bits (45), Expect = 5.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 361 VPGVCAYDGRGPCVIDKYL 305
VPGV A R PC I++ L
Sbjct: 197 VPGVVAMFSRKPCSINENL 215
>EF592537-1|ABQ95983.1| 593|Tribolium castaneum
beta-N-acetylglucosaminidase NAG2 protein.
Length = 593
Score = 21.8 bits (44), Expect = 7.2
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 480 PTSIARISSTLI 515
PTS+ +ISSTL+
Sbjct: 75 PTSVTKISSTLL 86
>EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2
protein.
Length = 535
Score = 21.8 bits (44), Expect = 7.2
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 267 IENGVQAKSDGSH--KYLSITQGPLPSYAHTPGTTIELTCEAA 389
I+ G +A +G + KYL + + Y H P T E AA
Sbjct: 429 IKFGRKADPNGDYIRKYLPVLKNMPSQYIHEPWTAPEQVQRAA 471
>AJ969955-1|CAI94742.1| 160|Tribolium castaneum torso-like protein
protein.
Length = 160
Score = 21.8 bits (44), Expect = 7.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +1
Query: 19 VPGNIRLTDTRN*RFNSCSPRTVASCESILRKKNSFF 129
+P N+ L D F+ V+S +RK S F
Sbjct: 58 IPNNVNLMDVVAREFDKIQVGDVSSVLKFIRKYGSHF 94
>AJ005422-1|CAA06528.1| 287|Tribolium castaneum caudal protein
protein.
Length = 287
Score = 21.8 bits (44), Expect = 7.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +3
Query: 231 KHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPS 341
K I+ S IDN NG + H+ + P P+
Sbjct: 218 KRIEEKSQIDNLFHNGFMQEQSTHHQGQLVVGLPAPT 254
>EF222296-1|ABN79656.2| 403|Tribolium castaneum arginine
vasopressin receptor protein.
Length = 403
Score = 21.4 bits (43), Expect = 9.5
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -3
Query: 609 YLYCRPQCWLAQSWSSW 559
Y+ C LAQ W++W
Sbjct: 273 YIACSTPFILAQLWATW 289
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,181
Number of Sequences: 336
Number of extensions: 4114
Number of successful extensions: 26
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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