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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_N03
         (754 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B...   274   2e-72
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ...   256   4e-67
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P...   255   7e-67
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ...   252   9e-66
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ...   248   1e-64
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498...   246   3e-64
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;...   235   6e-61
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri...   235   1e-60
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI...   235   1e-60
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ...   228   1e-58
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;...   221   2e-56
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ...   214   2e-54
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp...   212   9e-54
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol...   209   6e-53
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|...   208   8e-53
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI...   202   7e-51
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ...   200   2e-50
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ...   199   5e-50
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na...   199   7e-50
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F...   189   6e-47
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre...   186   7e-46
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|...   184   3e-45
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|...   184   3e-45
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob...   183   4e-45
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ...   180   4e-44
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ...   177   2e-43
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or...   175   1e-42
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro...   170   4e-41
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R...   162   1e-38
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na...   161   2e-38
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co...   159   9e-38
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N...   159   9e-38
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R...   155   8e-37
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu...   153   6e-36
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI...   140   3e-32
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ...   131   2e-29
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th...   131   2e-29
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di...   127   3e-28
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ...   127   3e-28
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub...   124   2e-27
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|...   118   2e-25
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri...   116   6e-25
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl...   116   8e-25
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4...   115   1e-24
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9....   114   2e-24
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|...   113   3e-24
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c...   112   1e-23
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq...   111   1e-23
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M...   111   2e-23
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=...   111   2e-23
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;...   110   3e-23
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A...   109   7e-23
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B...   109   9e-23
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ...   105   9e-22
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ...   104   2e-21
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=...   104   3e-21
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ...   101   1e-20
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=...   101   2e-20
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid...   101   2e-20
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9....    99   1e-19
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl...    97   4e-19
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh...    96   7e-19
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte...    94   4e-18
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac...    93   9e-18
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B...    92   2e-17
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni...    92   2e-17
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap...    91   2e-17
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob...    91   4e-17
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI...    90   5e-17
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P...    90   6e-17
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit...    89   8e-17
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil...    89   1e-16
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype...    89   1e-16
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa...    88   3e-16
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol...    87   6e-16
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3....    87   6e-16
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym...    84   3e-15
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter...    84   4e-15
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D...    83   5e-15
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha...    82   2e-14
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ...    81   2e-14
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae...    81   3e-14
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri...    81   4e-14
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;...    81   4e-14
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O...    79   9e-14
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ...    78   3e-13
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte...    77   4e-13
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl...    77   5e-13
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec...    76   1e-12
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti...    76   1e-12
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu...    73   1e-11
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium...    70   7e-11
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver...    70   7e-11
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My...    59   1e-07
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En...    59   1e-07
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te...    59   1e-07
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela...    48   2e-04
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach...    47   4e-04
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox...    46   0.001
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu...    40   0.050
UniRef50_Q9B6E2 Cluster: Cytochrome c oxidase subunit I; n=2; Ya...    40   0.087
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ...    40   0.087
UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=...    39   0.12 
UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia polym...    39   0.15 
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di...    36   0.81 
UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|R...    36   1.1  
UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;...    35   1.9  
UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3 pre...    34   3.3  
UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7; Locu...    34   4.3  
UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C...    33   10.0 
UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ...    33   10.0 
UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3; ...    33   10.0 

>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
           Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
           cynthia ricini (Indian eri silkmoth)
          Length = 510

 Score =  274 bits (671), Expect = 2e-72
 Identities = 144/240 (60%), Positives = 153/240 (63%)
 Frame = +2

Query: 2   RK*IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAX 181
           RK +YSTNHKDIGTLY                   AELG PGSLIGDDQIYNTIVTAHA 
Sbjct: 1   RKWLYSTNHKDIGTLYFIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAF 60

Query: 182 XXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG 361
                           N LVPL+LGAPD+AFPR+NN+ F              IVENGAG
Sbjct: 61  IMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAG 120

Query: 362 TG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 541
           TG TVYPPLSSNIAH G SVDLAIFSLHLAGISS                   SFDQ+PL
Sbjct: 121 TGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPL 180

Query: 542 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 721
           FV AVGITAF         AGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHP++
Sbjct: 181 FVWAVGITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPKL 240


>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
           rubiginosus
          Length = 504

 Score =  256 bits (627), Expect = 4e-67
 Identities = 136/248 (54%), Positives = 151/248 (60%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
           ++STNHKDIGTLY                   AELG PG+L+GDDQIYN IVTAHA    
Sbjct: 8   LFSTNHKDIGTLYLIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMI 67

Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
                        N LVPL++GAPD+AFPR+NN+ F               VE GAGTG 
Sbjct: 68  FFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGW 127

Query: 371 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
           TVYPPL+ N+AH G SVDLAIFSLHLAGISS                   S  Q PLFV 
Sbjct: 128 TVYPPLAGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVW 187

Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 730
           +V ITA          A  IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYIL
Sbjct: 188 SVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYIL 247

Query: 731 ILPGXGII 754
           ILPG G+I
Sbjct: 248 ILPGFGMI 255


>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
           Panarthropoda|Rep: Cytochrome c oxidase subunit I -
           Pagyris cymothoe
          Length = 487

 Score =  255 bits (625), Expect = 7e-67
 Identities = 132/208 (63%), Positives = 140/208 (67%)
 Frame = +2

Query: 110 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 289
           ELG PGSLIGDDQIYNTIVTAHA                 N L+PL+LGAPD+AFPR+NN
Sbjct: 13  ELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNN 72

Query: 290 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 469
           + F              IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS  
Sbjct: 73  MSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSIL 132

Query: 470 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 649
                            SFDQ+PLF+ AVGITA          AGAIT+LLTDRNLNTSF
Sbjct: 133 GAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLTDRNLNTSF 192

Query: 650 FDPAGGGDPILYQHLF*FFGHPEVYILI 733
           FDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 193 FDPAGGGDPILYQHLFWFFGHPEVYILI 220


>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
           root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 516

 Score =  252 bits (616), Expect = 9e-66
 Identities = 133/247 (53%), Positives = 147/247 (59%)
 Frame = +2

Query: 14  YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 193
           +STNHKDIGTLY                   AEL  PG+L+GDDQIYN IVTAHA     
Sbjct: 8   FSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIF 67

Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 373
                       N LVPL++GAPD+AFPR+NN+ F               VE GAGTG T
Sbjct: 68  FMVMPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWT 127

Query: 374 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 553
           VYPPL+ N+AH G SVDL IFSLHLAG+SS                   S  Q PLFV A
Sbjct: 128 VYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWA 187

Query: 554 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 733
           V +TA          A  IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 188 VLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILI 247

Query: 734 LPGXGII 754
           LPG GII
Sbjct: 248 LPGFGII 254


>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
           Eukaryota|Rep: Cytochrome c oxidase subunit I -
           Ophisurus macrorhynchos
          Length = 546

 Score =  248 bits (606), Expect = 1e-64
 Identities = 130/247 (52%), Positives = 147/247 (59%)
 Frame = +2

Query: 14  YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 193
           +STNHKDIGTLY                   AEL  PG+L+GDDQIYN IVTAHA     
Sbjct: 8   FSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIF 67

Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 373
                       N LVPL++GAPD+AFPR+NN+ F               VE GAGTG T
Sbjct: 68  FMVMPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWT 127

Query: 374 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 553
           VYPPL+ N+AH G SVDL IFSLHLAG+SS                   +  Q PLFV +
Sbjct: 128 VYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWS 187

Query: 554 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 733
           V +TA          A  IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 188 VLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILI 247

Query: 734 LPGXGII 754
           LPG G+I
Sbjct: 248 LPGFGMI 254


>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
           root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
           (Human)
          Length = 513

 Score =  246 bits (603), Expect = 3e-64
 Identities = 129/248 (52%), Positives = 148/248 (59%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
           ++STNHKDIGTLY                   AELG PG+L+G+D IYN IVTAHA    
Sbjct: 7   LFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMI 66

Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
                        N LVPL++GAPD+AFPR+NN+ F              +VE GAGTG 
Sbjct: 67  FFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGW 126

Query: 371 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
           TVYPPL+ N +H G SVDL IFSLHLAG+SS                   +  Q PLFV 
Sbjct: 127 TVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVW 186

Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 730
           +V ITA          A  IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYIL
Sbjct: 187 SVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYIL 246

Query: 731 ILPGXGII 754
           ILPG G+I
Sbjct: 247 ILPGFGMI 254


>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
           cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 527

 Score =  235 bits (576), Expect = 6e-61
 Identities = 123/250 (49%), Positives = 146/250 (58%), Gaps = 2/250 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXX 184
           ++STNHKDIGTLY                    EL  PG  I  G+ Q+YN ++TAHA  
Sbjct: 8   LFSTNHKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFL 67

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N  VP+++GAPD+AFPR+NNI F              +VE G+GT
Sbjct: 68  MIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGT 127

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
           G TVYPPLS   +H G +VDLAIFSLHL+G+SS                   +  +LPLF
Sbjct: 128 GWTVYPPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLF 187

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
           V +V +TAF         AGAIT+LLTDRN NT+FFDPAGGGDPILYQHLF FFGHPEVY
Sbjct: 188 VWSVLVTAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVY 247

Query: 725 ILILPGXGII 754
           ILILPG GII
Sbjct: 248 ILILPGFGII 257


>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
           Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
           subunit I - Periclimenes thermohydrophilus
          Length = 217

 Score =  235 bits (574), Expect = 1e-60
 Identities = 127/219 (57%), Positives = 147/219 (67%)
 Frame = -2

Query: 696 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 517
           NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV  T  TN G  S  I
Sbjct: 1   NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59

Query: 516 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 337
             +R             I+E PAKC+EKI  STD P CAI   SGG TVHPVP P STI 
Sbjct: 60  PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119

Query: 336 LEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIV 157
           L  + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP            KA AVT+ 
Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMT 179

Query: 156 L*I*SSPINDPGFPNSARIKSLKDVPIIPDQIPKIKYNV 40
           L I S PI  PG PNSARIKSL DVP +P   PK+KYNV
Sbjct: 180 L-IWSFPIKLPGCPNSARIKSLSDVPTMPAHAPKMKYNV 217


>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI8 (EC
           3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
           endonuclease aI8 precursor [Contains: Truncated
           non-functional cytochrome oxidase 1; Intron-encoded
           endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
           fungus)
          Length = 645

 Score =  235 bits (574), Expect = 1e-60
 Identities = 125/250 (50%), Positives = 144/250 (57%), Gaps = 2/250 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
           +YSTN KDIGTLY                    EL  PG   L GD Q+YN I+TAHA  
Sbjct: 5   LYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFV 64

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N LVP+++GAPD+AFPR+NNI F               VE GAGT
Sbjct: 65  MIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGT 124

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
           G TVYPPLS   +H G SVDLAIFSLHL+GISS                   +  +LPLF
Sbjct: 125 GWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLF 184

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
           V A+ +TA          AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF FFGHPEVY
Sbjct: 185 VWAIFVTAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPEVY 244

Query: 725 ILILPGXGII 754
           ILI+PG G++
Sbjct: 245 ILIIPGFGMV 254


>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
           cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
           Chondrus crispus (Carragheen)
          Length = 532

 Score =  228 bits (558), Expect = 1e-58
 Identities = 121/250 (48%), Positives = 146/250 (58%), Gaps = 2/250 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
           I+STNHKDIGTLY                    EL  P +  L+G+ QIYN ++TAHA  
Sbjct: 13  IFSTNHKDIGTLYLIFGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFL 72

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N LVP+++G+PD+AFPR+NNI F              +VE G GT
Sbjct: 73  MIFFMVMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGT 132

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
           G TVYPPLSS  +H G +VDLAIFSLH++G SS                   S  ++PLF
Sbjct: 133 GWTVYPPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLF 192

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
           V ++ +TAF         AGAIT+LLTDRN NTSFFD +GGGDPILYQHLF FFGHPEVY
Sbjct: 193 VWSILVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDASGGGDPILYQHLFWFFGHPEVY 252

Query: 725 ILILPGXGII 754
           ILILPG G+I
Sbjct: 253 ILILPGFGMI 262


>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
           Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
           melitaearum (Parasitoid wasp)
          Length = 499

 Score =  221 bits (539), Expect = 2e-56
 Identities = 114/215 (53%), Positives = 133/215 (61%)
 Frame = +2

Query: 110 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 289
           ELG PGSLIG+DQIYN+IVT+HA                 N L+PL+LG+PD++FPR+NN
Sbjct: 24  ELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRMNN 83

Query: 290 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 469
           + F               +  G GTG TVYPPLS  + H G SVDL IFSLHLAG SS  
Sbjct: 84  MSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASSIM 143

Query: 470 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 649
                            + D++ LF  +V ITA          AGAIT+LLTDRN+NTSF
Sbjct: 144 GAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITMLLTDRNMNTSF 203

Query: 650 FDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 754
           FDP+GGGDPILYQHLF FFGHPEVYILILPG GII
Sbjct: 204 FDPSGGGDPILYQHLFWFFGHPEVYILILPGFGII 238


>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
           Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
           - Placozoan sp. BZ2423
          Length = 498

 Score =  214 bits (522), Expect = 2e-54
 Identities = 112/232 (48%), Positives = 132/232 (56%)
 Frame = +2

Query: 14  YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 193
           +S NHKDIG+LY                    EL +PGS++GDD +YN IVTAHA     
Sbjct: 9   FSCNHKDIGSLYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIF 68

Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 373
                       N  VPL++GAPD+AFPR+NNI F              +VE GAGTG T
Sbjct: 69  FLVMPTMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWT 128

Query: 374 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 553
           VYPPL+S  AH G SVD+AIFSLHLAG+SS                   +  ++PLFV +
Sbjct: 129 VYPPLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWS 188

Query: 554 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 709
           V ITA          AGAIT+LLTDR  NT+FFDPAGGGDPILYQHLF FFG
Sbjct: 189 VLITAILLLLSLPVLAGAITMLLTDRYFNTTFFDPAGGGDPILYQHLFWFFG 240


>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
           precursor (DNA endonuclease I-SceIV) [Contains:
           Truncated non-functional cytochrome oxidase 1; DNA
           endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
           endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
           Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
           endonuclease I-SceIV) [Contains: Truncated
           non-functional cytochrome oxidase 1; DNA endonuclease
           aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
           SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
          Length = 630

 Score =  212 bits (517), Expect = 9e-54
 Identities = 116/250 (46%), Positives = 137/250 (54%), Gaps = 2/250 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
           +YSTN KDI  LY                    EL  PGS  L G+ Q++N +V  HA  
Sbjct: 6   LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVL 65

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N L+PL++GA D AFPRINNI F              +VE+GAGT
Sbjct: 66  MIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGT 125

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
           G TVYPPLSS  AH G SVDLAIF+LHL  ISS                   +  +LPLF
Sbjct: 126 GWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLF 185

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
           V ++ ITAF         +  IT+LL DRN NTSFF+ +GGGDPILY+HLF FFGHPEVY
Sbjct: 186 VWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVY 245

Query: 725 ILILPGXGII 754
           ILI+PG GII
Sbjct: 246 ILIIPGFGII 255


>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
           polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
           Cytochrome oxidase subunits 1 and 2 polyprotein -
           Phaeosphaeria nodorum SN15
          Length = 789

 Score =  209 bits (510), Expect = 6e-53
 Identities = 115/247 (46%), Positives = 133/247 (53%), Gaps = 1/247 (0%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXX 193
           S+N KDIG LY                    EL  PG   I D+Q+YN+I+TAHA     
Sbjct: 9   SSNAKDIGVLYLIYALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIF 68

Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 373
                       N L+PL LG PD+ FPR+NNI +               +ENG GTG T
Sbjct: 69  FMVMPALIGGFGNFLLPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWT 128

Query: 374 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 553
           +YPPLS   +H G SVDLAIF LHL+GISS                      +L LF  A
Sbjct: 129 LYPPLSGIQSHSGPSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWA 188

Query: 554 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 733
           V ITA          AG IT++LTDRN NTSFF+ AGGGDPILYQHLF FFGHPEVYILI
Sbjct: 189 VVITAVLLLLSLPVLAGGITMVLTDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILI 248

Query: 734 LPGXGII 754
           +PG GII
Sbjct: 249 IPGFGII 255


>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
           group|Rep: Endonuclease - Saccharomyces servazzii
           (Yeast)
          Length = 675

 Score =  208 bits (509), Expect = 8e-53
 Identities = 113/250 (45%), Positives = 136/250 (54%), Gaps = 2/250 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
           +YSTN KDI  +Y                    EL  PGS  L G+ Q++N +V  HA  
Sbjct: 6   LYSTNAKDISIMYFMLALFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVL 65

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N ++PL++GA D++FPRIN+I F              +VE+GAGT
Sbjct: 66  MIFFLAMPALIGGFGNYMLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGT 125

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
           G TVYPPLSS  AH G SVDLAIFSLHL  ISS                   S  ++PLF
Sbjct: 126 GWTVYPPLSSIQAHSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLF 185

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
           V A+ ITAF         +  IT+LL DRN NTSFF+ AGGGDPI YQH F FFGHPEVY
Sbjct: 186 VWAIFITAFLLLLSLPVLSAGITMLLMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHPEVY 245

Query: 725 ILILPGXGII 754
           ILI+PG GI+
Sbjct: 246 ILIIPGFGIV 255


>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI5 (EC
           3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
           intron-encoded endonuclease aI5 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 536

 Score =  202 bits (493), Expect = 7e-51
 Identities = 111/231 (48%), Positives = 127/231 (54%), Gaps = 2/231 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
           +YSTN KDIGTLY                    EL  PG   L GD Q+YN I+TAHA  
Sbjct: 5   LYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFV 64

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N LVP+++GAPD+AFPR+NNI F               VE GAGT
Sbjct: 65  MIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGT 124

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
           G TVYPPLS   +H G SVDLAIFSLHL+GISS                   +  +LPLF
Sbjct: 125 GWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLF 184

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 697
           V A+ +TA          AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF
Sbjct: 185 VWAIFVTAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLF 235


>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
           Bilateria|Rep: Cytochrome c oxidase subunit I -
           Homalopoma maculosa
          Length = 219

 Score =  200 bits (489), Expect = 2e-50
 Identities = 105/196 (53%), Positives = 118/196 (60%)
 Frame = +2

Query: 110 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 289
           ELG PGS IG+DQ+YN +VTAHA                 N LVPL+LGAPD+AFPR+NN
Sbjct: 23  ELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNN 82

Query: 290 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 469
           + F               VE+GAGTG TVYPPLS N AH G SVDLAIFSLHLAG+SS  
Sbjct: 83  MSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSSIL 142

Query: 470 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 649
                              + + LFV +V ITA          AGAIT+LLTDRN NTSF
Sbjct: 143 GAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNTSF 202

Query: 650 FDPAGGGDPILYQHLF 697
           FDPAGGGDPILYQHLF
Sbjct: 203 FDPAGGGDPILYQHLF 218


>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
           Eukaryota|Rep: Cytochrome c oxidase subunit I -
           Paracoccidioides brasiliensis
          Length = 710

 Score =  199 bits (486), Expect = 5e-50
 Identities = 108/247 (43%), Positives = 131/247 (53%), Gaps = 1/247 (0%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXX 193
           S+N KDI  LY                    EL  PG   I D+Q+YN+I+T+H      
Sbjct: 35  SSNAKDIAILYLIFALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIF 94

Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 373
                       N L+P+++G PD+AFPR+NN+ +              I+ENG GTG T
Sbjct: 95  FMVMPALIGGFGNFLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWT 154

Query: 374 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 553
           +YPPLS   +H    VDL IF LHL+GISS                      +L LF  A
Sbjct: 155 LYPPLSGIQSHSSMGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWA 214

Query: 554 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 733
           V ITA          A AIT+LLTDRNLNTSF++ AGGGD ILYQHLF FFGHPEVYILI
Sbjct: 215 VVITAVLLLLSLPVLAAAITMLLTDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVYILI 274

Query: 734 LPGXGII 754
           +PG GII
Sbjct: 275 IPGFGII 281


>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
           Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
           Naegleria gruberi
          Length = 633

 Score =  199 bits (485), Expect = 7e-50
 Identities = 108/250 (43%), Positives = 126/250 (50%), Gaps = 2/250 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
           I++TNHK IG LY                    EL  PG   L G+   YN I T H   
Sbjct: 9   IFTTNHKRIGILYLFFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVL 68

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N  VP+++GAPD++FPR+NN  F                E G GT
Sbjct: 69  MLFVVVMPILFGGFGNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGT 128

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
           G TVYPPLSS  +H G SVDL IFS HL GI S                       LPLF
Sbjct: 129 GWTVYPPLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLF 188

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
           V +V +T+F         A AIT+LL DRN NTSF+DP GGGD +LYQHLF FFGHPEVY
Sbjct: 189 VWSVAVTSFLVIVAIPVLAAAITLLLFDRNFNTSFYDPVGGGDVVLYQHLFWFFGHPEVY 248

Query: 725 ILILPGXGII 754
           ILILPG G++
Sbjct: 249 ILILPGFGLV 258


>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
           Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
           - Trichoderma reesei (Hypocrea jecorina)
          Length = 635

 Score =  189 bits (461), Expect = 6e-47
 Identities = 108/251 (43%), Positives = 131/251 (52%), Gaps = 5/251 (1%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXX 193
           STN KDIGTLY                    EL  PG   I ++Q+YN+I+TAHA     
Sbjct: 37  STNAKDIGTLYLIFALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIF 96

Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 373
                       N L+PL++G PD+AFPR+NNI F              I+E G GTG T
Sbjct: 97  FMVMPALIGGFGNFLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWT 156

Query: 374 V----YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 541
           +    YPPLS   +H G SVDLAIF+LHL+G+SS                      +L L
Sbjct: 157 LLKDKYPPLSGLQSHSGPSVDLAIFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLAL 216

Query: 542 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 721
           F        +            IT++LTDRN NTSFF+ AGGGDPIL+QHLF FFGHPEV
Sbjct: 217 F-------GWATWSSRSRYFLGITMVLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEV 269

Query: 722 YILILPGXGII 754
           YILI+PG GII
Sbjct: 270 YILIIPGFGII 280


>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
           precursor (DNA endonuclease I- SceII) [Contains:
           Truncated non-functional cytochrome oxidase 1; DNA
           endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
           endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
           Intron-encoded DNA endonuclease aI4 precursor (DNA
           endonuclease I- SceII) [Contains: Truncated
           non-functional cytochrome oxidase 1; DNA endonuclease
           aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
           - Saccharomyces cerevisiae (Baker's yeast)
          Length = 556

 Score =  186 bits (452), Expect = 7e-46
 Identities = 105/244 (43%), Positives = 127/244 (52%), Gaps = 2/244 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
           +YSTN KDI  LY                    EL  PGS  L G+ Q++N +V  HA  
Sbjct: 6   LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVL 65

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N L+PL++GA D AFPRINNI F              +VE+GAGT
Sbjct: 66  MIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGT 125

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
           G TVYPPLSS  AH G SVDLAIF+LHL  ISS                   +  +LPLF
Sbjct: 126 GWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLF 185

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
           V ++ ITAF         +  IT+LL DRN NTSFF+ +GGGDPILY+HLF FFG     
Sbjct: 186 VWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVAT 245

Query: 725 ILIL 736
           I++L
Sbjct: 246 IIML 249


>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
           stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
          Length = 763

 Score =  184 bits (447), Expect = 3e-45
 Identities = 97/250 (38%), Positives = 134/250 (53%), Gaps = 2/250 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXX 184
           ++STN ++I  LY                    EL   NP  L+ + Q++N ++TAHA  
Sbjct: 23  LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N LVPL +G+ D AFPRINN+ F              +++ G G+
Sbjct: 83  MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
           G T+YPPL+S  +H G S+D+AIF+LHL+G+SS                    + +LPLF
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLF 202

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
           V +V ITA          A  +T+LL DRN NTSFF  +GGGDP+LY+H+F FFGHPEVY
Sbjct: 203 VWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVY 262

Query: 725 ILILPGXGII 754
           ILI+P  G++
Sbjct: 263 ILIVPVFGVV 272


>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
           stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
          Length = 676

 Score =  184 bits (447), Expect = 3e-45
 Identities = 97/250 (38%), Positives = 134/250 (53%), Gaps = 2/250 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXX 184
           ++STN ++I  LY                    EL   NP  L+ + Q++N ++TAHA  
Sbjct: 23  LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N LVPL +G+ D AFPRINN+ F              +++ G G+
Sbjct: 83  MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
           G T+YPPL+S  +H G S+D+AIF+LHL+G+SS                    + +LPLF
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLF 202

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
           V +V ITA          A  +T+LL DRN NTSFF  +GGGDP+LY+H+F FFGHPEVY
Sbjct: 203 VWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVY 262

Query: 725 ILILPGXGII 754
           ILI+P  G++
Sbjct: 263 ILIVPVFGVV 272


>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
           Alphaproteobacteria|Rep: Cytochrome-c oxidase -
           Sphingomonas sp. SKA58
          Length = 556

 Score =  183 bits (446), Expect = 4e-45
 Identities = 113/266 (42%), Positives = 135/266 (50%), Gaps = 20/266 (7%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-------SLIGD------DQIY- 154
           STNHKDIGTLY                   AEL  PG       +   D      DQ Y 
Sbjct: 33  STNHKDIGTLYLIFAIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYH 92

Query: 155 --NTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 328
             N ++TAH                  N  VP+++GAPD+AFPR+NNI F          
Sbjct: 93  LWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALL 152

Query: 329 XXXXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 496
                V     NGAGTG TVY PLS++    G +VD+AI SLH+AG SS           
Sbjct: 153 LGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTI 211

Query: 497 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDP 676
                   +  ++PLFV +V +TAF         A AIT+LLTDRN  T+F+D AGGGDP
Sbjct: 212 LNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDP 271

Query: 677 ILYQHLF*FFGHPEVYILILPGXGII 754
            LYQHLF FFGHPEVYI+ILPG GII
Sbjct: 272 ELYQHLFWFFGHPEVYIMILPGFGII 297


>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
           cellular organisms|Rep: Cytochrome c oxidase subunit I -
           Pandaka lidwilli
          Length = 507

 Score =  180 bits (437), Expect = 4e-44
 Identities = 100/211 (47%), Positives = 113/211 (53%)
 Frame = +2

Query: 26  HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 205
           HKDIGTLY                   AEL  PG+L+GDDQIYN IVTAHA         
Sbjct: 1   HKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 60

Query: 206 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 385
                   N L+PL++GAPD+AFPR+NN+ F               +E GAGTG TVYPP
Sbjct: 61  PIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPP 120

Query: 386 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 565
           L+ N+AH G SVDL IFSLHLAGISS                   S  Q PLFV AV IT
Sbjct: 121 LAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLIT 180

Query: 566 AFXXXXXXXXXAGAITILLTDRNLNTSFFDP 658
           A          A  IT+LLTDRNLNT+FFDP
Sbjct: 181 AVLLLLSLPVLAAGITMLLTDRNLNTTFFDP 211


>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
           n=1; Saccharomyces castellii|Rep: I-SceII DNA
           endonuclease-like protein - Saccharomyces castellii
           (Yeast)
          Length = 598

 Score =  177 bits (432), Expect = 2e-43
 Identities = 99/235 (42%), Positives = 122/235 (51%), Gaps = 2/235 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
           +YSTN KDI  LY                    EL  PG   L G++Q++N +V  HA  
Sbjct: 6   LYSTNAKDIAVLYFLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAIL 65

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N ++PL++GA D AFPRINNI F              +VE+GAGT
Sbjct: 66  MIFFMVMPALIGGFGNYMLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGT 125

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
           G TVYPPL+S  AH G SVDLAIF+LH+  ISS                   +  +LPLF
Sbjct: 126 GWTVYPPLASIQAHSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLF 185

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 709
           V A+ ITA          +  +T+LL DRN NTSFF+ AGGGDPILY+HLF FFG
Sbjct: 186 VWAILITAVLLLLTLPVLSAGVTMLLLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240


>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
           organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
           (strain CCS1)
          Length = 628

 Score =  175 bits (425), Expect = 1e-42
 Identities = 88/218 (40%), Positives = 121/218 (55%), Gaps = 2/218 (0%)
 Frame = +2

Query: 107 AELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 280
           A LG    L G  D  ++N ++T H                  N  +PL++GAPD+AFPR
Sbjct: 143 ALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPR 202

Query: 281 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 460
           +NN+ +              +++ GAG G T YPP+S+      R+VD AIF++H++G S
Sbjct: 203 LNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGAS 262

Query: 461 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 640
           S                   +  ++PLF  +V +TA+         AGAIT+LLTDRN  
Sbjct: 263 SILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNFG 322

Query: 641 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 754
           T+FFDPAGGGDPIL+QH+F FFGHPEVYI+ILP  G+I
Sbjct: 323 TTFFDPAGGGDPILFQHIFWFFGHPEVYIVILPAFGVI 360


>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
           group|Rep: COX1-i5 protein - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 608

 Score =  170 bits (413), Expect = 4e-41
 Identities = 97/244 (39%), Positives = 123/244 (50%), Gaps = 2/244 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
           ++STN KDI  LY                    EL N GS  L G+ Q +N ++TAHA  
Sbjct: 11  LFSTNAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAIL 70

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N L+PL+LGA D+AF R+NNI F              +VE GAGT
Sbjct: 71  MIFFFVMPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGT 130

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
           G TVY PL+   +H G +VDLAIFSLHL+G SS                    ++ +PLF
Sbjct: 131 GWTVYFPLAGIQSHSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLF 190

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
             AV  TA          A  +T+ + DRN NTSFF+ AGGGD +LYQHLF ++ HPEV 
Sbjct: 191 AWAVLFTAILLLLSLPVLAAGLTMGIFDRNFNTSFFEYAGGGDAVLYQHLFYWWNHPEVK 250

Query: 725 ILIL 736
           I+ L
Sbjct: 251 IICL 254


>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
           Cox-i3 protein - Candida stellata (Yeast)
          Length = 588

 Score =  162 bits (393), Expect = 1e-38
 Identities = 90/246 (36%), Positives = 127/246 (51%), Gaps = 4/246 (1%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXX 184
           ++STN ++I  LY                    EL   NP  L+ + Q++N ++TAHA  
Sbjct: 23  LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N LVPL +G+ D AFPRINN+ F              +++ G G+
Sbjct: 83  MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
           G T+YPPL+S  +H G S+D+AIF+LHL+G+SS                    + +LPLF
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLF 202

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH--PE 718
           V +V ITA          A  +T+LL DRN NTSFF  +GGGDP+LY+H+F FFG   P 
Sbjct: 203 VWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGQIWPI 262

Query: 719 VYILIL 736
           + I+I+
Sbjct: 263 IIIIII 268


>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
           Naupactini|Rep: Cytochrome c oxidase subunit I -
           Galapaganus collaris
          Length = 406

 Score =  161 bits (390), Expect = 2e-38
 Identities = 87/156 (55%), Positives = 96/156 (61%)
 Frame = +2

Query: 245 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 424
           L LGAPD  FPR  N+ F               VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4   LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63

Query: 425 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 604
           LAIFSLH+AG+ S                   +  ++PLFV AV ITA          AG
Sbjct: 64  LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123

Query: 605 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 712
           AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159


>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
           unguis
          Length = 573

 Score =  159 bits (385), Expect = 9e-38
 Identities = 87/247 (35%), Positives = 120/247 (48%), Gaps = 1/247 (0%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
           S NHKDIGT+Y                    EL +PG  +    +Y++I+T HA      
Sbjct: 11  SVNHKDIGTIYLYMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFF 70

Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
                      N  +PL++   D++ PR+NN+                +   G G G T+
Sbjct: 71  FVMPTSIGGLGNWFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTM 130

Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*A 553
           YPPLS++    G  +DLA+FSLH+AG+SS                    F  L P+ +  
Sbjct: 131 YPPLSNSEFMDGLPIDLAVFSLHMAGMSSIAGSINFLVTIFNMRMGALFFMSLNPMLIWT 190

Query: 554 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 733
           +  T+          A  +T+LL DR+ +TSF+ P GGGDPIL+QHLF FFGHPEVYILI
Sbjct: 191 LFGTSILLVTSVPVLAAGLTLLLLDRHFSTSFYYPEGGGDPILWQHLFWFFGHPEVYILI 250

Query: 734 LPGXGII 754
           LP  G+I
Sbjct: 251 LPAFGVI 257


>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
           Nematoda|Rep: Cytochrome c oxidase subunit I -
           Onchocerca volvulus
          Length = 548

 Score =  159 bits (385), Expect = 9e-38
 Identities = 88/250 (35%), Positives = 116/250 (46%), Gaps = 2/250 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
           I + NHK IGT Y                    EL +PG     G  Q+YN+++T H   
Sbjct: 16  INTVNHKTIGTYYIVLGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVL 75

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N ++PL+LGAP++AFPR+N + F               +  G G+
Sbjct: 76  MIFFLVMPILIGGFGNWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGS 135

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
             T YPPLS        S+D  I  LH  GI S                   + DQ+ +F
Sbjct: 136 SWTFYPPLSVE-GQPELSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMF 194

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
           V    +T+F         AG++  LL DRN NTSF+D   GG+P+LYQHLF FFGHPEVY
Sbjct: 195 VWTSYLTSFLLVLSVPVLAGSLLFLLLDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVY 254

Query: 725 ILILPGXGII 754
           ++ILP  GII
Sbjct: 255 VIILPVFGII 264


>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
           Cox-i2 protein - Candida stellata (Yeast)
          Length = 586

 Score =  155 bits (377), Expect = 8e-37
 Identities = 91/249 (36%), Positives = 127/249 (51%), Gaps = 2/249 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXX 184
           ++STN ++I  LY                    EL   NP  L+ + Q++N ++TAHA  
Sbjct: 23  LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N LVPL +G+ D AFPRINN+ F              +++ G G+
Sbjct: 83  MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
           G T+YPPL+S  +H G S+D+AIF+LHL+G+SS                    + +LPLF
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLF 202

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
           V +V ITA          A  +T+LL DRN NTSFF  +GGGDP+LY+H+  F+ +P V 
Sbjct: 203 VWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHI--FYKNP-VL 259

Query: 725 ILILPGXGI 751
           ILI    GI
Sbjct: 260 ILIWLTSGI 268


>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
           Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
           Leishmania tarentolae (Sauroleishmania tarentolae)
          Length = 549

 Score =  153 bits (370), Expect = 6e-36
 Identities = 87/248 (35%), Positives = 113/248 (45%), Gaps = 2/248 (0%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELG--NPGSLIGDDQIYNTIVTAHAXXXX 190
           S +HK IG  Y                    EL     G L GD Q YN ++T+H     
Sbjct: 10  SVSHKMIGLCYLLVAILSGFVGYVYSLFIRLELSLIGCGILFGDYQFYNVLITSHGLIMV 69

Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
                        N  +P++ G PD+ FPR+NN+ F              + E G G G 
Sbjct: 70  FAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGW 129

Query: 371 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
           T+YP L     H   + D  +F++HL GISS                   SF    LF+ 
Sbjct: 130 TLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINLLGTLFCCRRKFFSFLSWSLFIW 189

Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 730
           A  ITA          AG +T++L DRN NTSF+D  GGGD IL+QH+F FFGHPEVYI+
Sbjct: 190 AALITAILLIITLPVLAGGVTLILCDRNFNTSFYDVVGGGDLILFQHIFWFFGHPEVYII 249

Query: 731 ILPGXGII 754
           +LP  G+I
Sbjct: 250 LLPVFGLI 257


>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI4 (EC
           3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
           intron-encoded endonuclease aI4 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 530

 Score =  140 bits (339), Expect = 3e-32
 Identities = 83/200 (41%), Positives = 97/200 (48%), Gaps = 2/200 (1%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
           +YSTN KDIGTLY                    EL  PG   L GD Q+YN I+TAHA  
Sbjct: 5   LYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFV 64

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N LVP+++GAPD+AFPR+NNI F               VE GAGT
Sbjct: 65  MIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGT 124

Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
           G TVYPPLS   +H G SVDLAIFSLHL+GISS                   +  +LPLF
Sbjct: 125 GWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLF 184

Query: 545 V*AVGITAFXXXXXXXXXAG 604
           V A+ +TA          AG
Sbjct: 185 VWAIFVTAILLLLSLPVLAG 204


>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
           Alveolata|Rep: Cytochrome c oxidase subunit 1 -
           Plasmodium falciparum
          Length = 476

 Score =  131 bits (317), Expect = 2e-29
 Identities = 80/252 (31%), Positives = 114/252 (45%), Gaps = 4/252 (1%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQI--YNTIVTAHAX 181
           I + NHK +G  Y                    EL +    +I  + +  YN I T H  
Sbjct: 9   ITNCNHKTLGLYYLWFSFLFGSYGFLLSVILRTELYSSSLRIIAQENVNLYNMIFTIHGI 68

Query: 182 XXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG 361
                           N  +P++ G+P++A+PRIN+I                  E G G
Sbjct: 69  IMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLVILSTAAEFGGG 128

Query: 362 TG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLP 538
           TG T+YPPLS+++      +VD+ IF L ++G++S                   +   L 
Sbjct: 129 TGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHLRAKGLTLGILS 188

Query: 539 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPE 718
           +   ++ IT+           G + +LL+D + NT FFDP   GDPILYQHLF FFGHPE
Sbjct: 189 VSTWSLIITSGMLLLTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPE 248

Query: 719 VYILILPGXGII 754
           VYILILP  G+I
Sbjct: 249 VYILILPAFGVI 260


>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
           Theileria|Rep: Cytochrome c oxidase subunit 1 -
           Theileria parva
          Length = 481

 Score =  131 bits (316), Expect = 2e-29
 Identities = 80/249 (32%), Positives = 111/249 (44%), Gaps = 3/249 (1%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDD--QIYNTIVTAHAXXX 187
           S NHK IG  Y                    EL   G  +I  D  +IYN + T H    
Sbjct: 14  SGNHKIIGISYLWLAYWFGMIGFYMSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIM 73

Query: 188 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 367
                         N L P++LG  D+ +PR+N                   +E G+GTG
Sbjct: 74  VFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTG 133

Query: 368 *TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 547
            T+YPPLS+++++ G  +D  IF L  AGI+S                     D++    
Sbjct: 134 WTLYPPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSVKTIGFVIDRISPAA 191

Query: 548 *AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYI 727
            ++ +T+F              ++  DR+ NT FF+ +  GDP+LYQHLF FFGHPEVYI
Sbjct: 192 WSIVLTSFLLLLSLPVVTAVFLMVFLDRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVYI 251

Query: 728 LILPGXGII 754
           +ILPG GII
Sbjct: 252 MILPGFGII 260


>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
           Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
           Dicyema misakiense
          Length = 473

 Score =  127 bits (306), Expect = 3e-28
 Identities = 81/247 (32%), Positives = 109/247 (44%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
           I S NH D+  LY                    +L  P  L  D  +YN  VT H     
Sbjct: 4   IMSVNHIDVSLLYFSLGIFSALLGMSFSLLFRLQLAFPSILTSD--VYNAFVTLHGLVMV 61

Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
                        N L+P     PD+ FPR+N + F              ++ + A  G 
Sbjct: 62  FFAAMPTAIGFFANLLIPYHCNLPDLLFPRMNALSFWLMPFSLSL-----LLFSMASAGW 116

Query: 371 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
           T YPPLSS       SV+ ++FSLHLAGI+S                    +  L LF  
Sbjct: 117 TFYPPLSS----LSPSVEFSVFSLHLAGIASLISSCNFLVTMLATRTSL--WYSLSLFCW 170

Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 730
           ++ + +          A  IT++LTD++L T F+D   GGDP+LYQHLF FFGHPEVY++
Sbjct: 171 SIVLVSLLLVLSLPVLAVGITLILTDKHLGTCFYDATMGGDPLLYQHLFWFFGHPEVYVV 230

Query: 731 ILPGXGI 751
           ILP  G+
Sbjct: 231 ILPVFGL 237


>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
           Bilateria|Rep: Cytochrome c oxidase subunit I -
           Schistosoma mansoni (Blood fluke)
          Length = 609

 Score =  127 bits (306), Expect = 3e-28
 Identities = 84/246 (34%), Positives = 107/246 (43%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
           S +HK IG LY                     L +P   +    +YN +VT H       
Sbjct: 107 SLDHKRIGLLYFVFGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFF 166

Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
                      N  +P+ L   D+  PR+N++                    G G G T+
Sbjct: 167 FLMPILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTL 224

Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 556
           YPPLS      G  VD  +FSLHLAG+SS                   S     + V A 
Sbjct: 225 YPPLSI-WEGSGFGVDYLMFSLHLAGVSSLIGSVNFISTIFSRLSFNCS-----IIVWAY 278

Query: 557 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 736
             T+          A  IT+LL DRN  T+FF+P+GGGDPIL+QHLF FFGHPEVY+LIL
Sbjct: 279 LFTSVLLLLSLPVLASGITMLLFDRNFGTAFFEPSGGGDPILFQHLFWFFGHPEVYVLIL 338

Query: 737 PGXGII 754
           PG GI+
Sbjct: 339 PGFGIV 344


>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
           subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
           terminal oxidase, subunit I - Haloquadratum walsbyi
           (strain DSM 16790)
          Length = 634

 Score =  124 bits (300), Expect = 2e-27
 Identities = 88/254 (34%), Positives = 115/254 (45%), Gaps = 8/254 (3%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
           + +HKDIG LY                    EL +PG  +  +  YN+++T+H       
Sbjct: 91  TVDHKDIGLLYGAFGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFL 150

Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXX--XXXXXXXXXXXIVEN-GAGTG 367
                      N L+PL++GA D+AFPRIN I F                I E   A TG
Sbjct: 151 FATPIIAAFS-NYLIPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTG 209

Query: 368 *TVYPPLS-----SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ 532
            T+Y PLS      N A+ G  VDL +  LHL+G+S+                   S+  
Sbjct: 210 WTMYTPLSVGEGMGNQANAG--VDLMLLGLHLSGVSATMGSINFIATIFTERGKNVSWAN 267

Query: 533 LPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 712
           L +F   +   +            AI +LL DRN  TSFF  AG G  IL+QHLF FFGH
Sbjct: 268 LDIFSWTILTQSGLILFAFPLLGSAIMMLLFDRNFGTSFF--AGEGGAILWQHLFWFFGH 325

Query: 713 PEVYILILPGXGII 754
           PEVYI++LP  GII
Sbjct: 326 PEVYIIVLPPMGII 339


>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
           Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
           maris DSM 8797
          Length = 754

 Score =  118 bits (284), Expect = 2e-25
 Identities = 73/248 (29%), Positives = 103/248 (41%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
           + + +HK IG +Y                    +L  P +     +++N + T H     
Sbjct: 27  VSTLDHKRIGIMYILTAVFYLAVGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMV 86

Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
                        N  VPL++GA D+AFPR+N+  F              +  +    G 
Sbjct: 87  FLVGMPVLTGFA-NYFVPLMIGARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGW 145

Query: 371 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
             Y PLSS      + VD  I  L + GI S                   S  ++PLFV 
Sbjct: 146 FSYVPLSSKAYSSLQGVDYWIIGLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVW 205

Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 730
            + + A            A+ +LL DR L ++FFDP  GG  +L+QH F  FGHPEVYIL
Sbjct: 206 MMLMQAILIILALPALNSALAMLLIDRWLGSAFFDPTRGGSAVLWQHYFWIFGHPEVYIL 265

Query: 731 ILPGXGII 754
           ILPG G+I
Sbjct: 266 ILPGFGMI 273


>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
           Cystobacterineae|Rep: Cytochrome-c oxidase -
           Anaeromyxobacter sp. Fw109-5
          Length = 596

 Score =  116 bits (279), Expect = 6e-25
 Identities = 69/207 (33%), Positives = 92/207 (44%), Gaps = 6/207 (2%)
 Frame = +2

Query: 152 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 331
           Y  I T H                  N L+PL++GA D+AFPR+N   F           
Sbjct: 86  YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145

Query: 332 XXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 508
                  G AG G T Y PLS+N+   G    L + ++ + G+SS               
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205

Query: 509 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA-----GGGD 673
               ++ +LPL +  + +TA            A  +LL DR+  T FF        GGGD
Sbjct: 206 APGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGD 265

Query: 674 PILYQHLF*FFGHPEVYILILPGXGII 754
           PIL+QHLF  FGHPEVYI+ILP  GI+
Sbjct: 266 PILWQHLFWIFGHPEVYIMILPAWGIL 292


>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
           gracilis|Rep: Cytochrome oxidase subunit I - Euglena
           gracilis
          Length = 495

 Score =  116 bits (278), Expect = 8e-25
 Identities = 74/251 (29%), Positives = 113/251 (45%), Gaps = 6/251 (2%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI----GDDQIYNTIVTAHAXX 184
           +T+HK IG LY                    EL   G  I     +  IYN  +T H   
Sbjct: 15  TTSHKIIGILYGYMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLI 74

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAG 361
                          N L+P+++G  +++ PR+N I F              ++      
Sbjct: 75  MLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPIS 134

Query: 362 TG*TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLP 538
           +G T+YPPLS+  A   G ++DL++  +H+ GISS                   +F  + 
Sbjct: 135 SGWTLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNIN 194

Query: 539 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPE 718
           ++  ++ +T+            AIT LL DRN+N++ +D  G  DP+LYQHLF FFGHPE
Sbjct: 195 IYNFSIIVTSILLIGSLPILGVAITGLLLDRNINSTIYDVIG--DPVLYQHLFWFFGHPE 252

Query: 719 VYILILPGXGI 751
           VY++ILP  G+
Sbjct: 253 VYVIILPVFGL 263


>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
           Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
           - Halobacterium salinarium (Halobacterium halobium)
          Length = 593

 Score =  115 bits (277), Expect = 1e-24
 Identities = 74/248 (29%), Positives = 106/248 (42%), Gaps = 2/248 (0%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
           + +HKDIG LY                    EL      +    +YN ++T+H       
Sbjct: 65  TVDHKDIGILYGVYGTIAFAWGGVSVLLMRTELATSSETLISPSLYNGLLTSHGITMLFL 124

Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG* 370
                      N  +PL++ A D+AFPRIN I F              ++     A T  
Sbjct: 125 FGTPMIAAFG-NYFIPLLIDADDMAFPRINAIAFWLLPPGAILIWSGFLIPGIATAQTSW 183

Query: 371 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
           T+Y PLS  ++    +VD+ +  LHL G+S+                    +  L +F  
Sbjct: 184 TMYTPLSLQMS--SPAVDMMMLGLHLTGVSATMGAINFIATIFTERGEDVGWPDLDIFSW 241

Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 730
            +   +            A+ +LL DRN  T+FF  AGG DPI +QHLF FFGHPEVY+L
Sbjct: 242 TMLTQSGLILFAFPLFGSALIMLLLDRNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVYVL 300

Query: 731 ILPGXGII 754
           +LP  GI+
Sbjct: 301 VLPPMGIV 308


>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
           1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
           n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
           (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
           Synechocystis sp. (strain PCC 6803)
          Length = 551

 Score =  114 bits (275), Expect = 2e-24
 Identities = 76/247 (30%), Positives = 100/247 (40%)
 Frame = +2

Query: 14  YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 193
           +  +HK IG  Y                    EL  P       ++YN ++T H      
Sbjct: 23  FCVDHKVIGIQYLVTSFLFFFIGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIF 82

Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 373
                       N L+PL++G  D+AFPR+N + F               V      G T
Sbjct: 83  LWIVPAGAAFA-NYLIPLMVGTEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWT 140

Query: 374 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 553
            YPPLS      G   +L I SL L G SS                       +PLF  A
Sbjct: 141 SYPPLSLLSGKWGE--ELWILSLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWA 198

Query: 554 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 733
           +  T+          A A+ +L  D    TSFF+P GGGDP++YQHLF F+ HP VYI+I
Sbjct: 199 MLATSSLILLSTPVLASALILLSFDLIAGTSFFNPVGGGDPVVYQHLFWFYSHPAVYIMI 258

Query: 734 LPGXGII 754
           LP  G+I
Sbjct: 259 LPFFGVI 265


>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
           Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
           RS-1
          Length = 641

 Score =  113 bits (273), Expect = 3e-24
 Identities = 75/246 (30%), Positives = 100/246 (40%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
           +T+HK IG +Y                    +LG P +      +YN + T H       
Sbjct: 28  TTDHKRIGIMYLVSAFVFFLIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFL 87

Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
                      N +VPL++GA D+AFPR+N +                 V      G   
Sbjct: 88  GLMPLNVGLG-NYMVPLMIGARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFA 146

Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 556
           Y PL+         VD  I  + L G++S                   + +++PLFV   
Sbjct: 147 YAPLTQKQFAPTAGVDYWIVGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQ 206

Query: 557 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 736
            + AF           A   LL DR+  T FF P  GGD +L+QHLF FFGHPEVYILIL
Sbjct: 207 LVVAFILIFAFPVLTVATIQLLFDRHFGTRFFLPNLGGDAVLWQHLFWFFGHPEVYILIL 266

Query: 737 PGXGII 754
           P  GII
Sbjct: 267 PTMGII 272


>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
           cellular organisms|Rep: Cytochrome C oxidase subunit I -
           Rhizobium loti (Mesorhizobium loti)
          Length = 623

 Score =  112 bits (269), Expect = 1e-23
 Identities = 74/247 (29%), Positives = 103/247 (41%), Gaps = 1/247 (0%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXXXX 193
           + +HK IG  Y                    +L  P +  IG D+ YN I T H      
Sbjct: 26  TVDHKIIGRRYTVTAFVFLALGGVLALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNMMF 84

Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 373
                         LVPL++G   IAFPR+N   +               V+ G   G  
Sbjct: 85  LFAVPVMQAMAIY-LVPLMVGTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWF 143

Query: 374 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 553
            Y PLS      G+  D+    +    +S+                   S D++PLFV +
Sbjct: 144 AYVPLSGPQYAAGKRADIWAQMITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWS 203

Query: 554 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 733
           + +T+F           A T L+ DR + T FF+PA GGD +L+QHLF FFGHPEVYI+ 
Sbjct: 204 MLVTSFLVILAMPAIMIASTSLILDRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYIIF 263

Query: 734 LPGXGII 754
           LP  G++
Sbjct: 264 LPAVGMV 270


>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
           Aquifex aeolicus
          Length = 485

 Score =  111 bits (268), Expect = 1e-23
 Identities = 66/209 (31%), Positives = 95/209 (45%)
 Frame = +2

Query: 122 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 301
           PG  + D + YN ++T H                  N L+PL++GA D+AFPR+N + + 
Sbjct: 2   PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61

Query: 302 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 481
                        I  N   T  T YPP S N  +      L +F +HL G SS      
Sbjct: 62  AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119

Query: 482 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 661
                        +F +  LFV  +              AGA+T+L  D+ L T+FF+PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179

Query: 662 GGGDPILYQHLF*FFGHPEVYILILPGXG 748
            GGDP++YQ++F F+ HP VY+ +LP  G
Sbjct: 180 KGGDPLIYQNIFWFYSHPVVYVQVLPVFG 208


>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
           Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
           subunit I - Myxococcus xanthus (strain DK 1622)
          Length = 556

 Score =  111 bits (267), Expect = 2e-23
 Identities = 73/249 (29%), Positives = 105/249 (42%), Gaps = 1/249 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
           + + +HK IG ++                    EL  PG  I D   YN   T H     
Sbjct: 37  LLTVDHKRIGLMFLFWVLLFFLVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMI 96

Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
                        N ++PL+LGA D+AFPR+N +                ++  G  TG 
Sbjct: 97  FLFMIPAIPAVFGNFMLPLMLGAKDVAFPRLNLLSLYIYLAGAVLALWG-MLNGGLDTGW 155

Query: 371 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
           T Y P S   AH   +V   +F   + G SS                   ++ ++PLFV 
Sbjct: 156 TFYTPYS---AHTTTTVAPVLFGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPLFVW 212

Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNL-NTSFFDPAGGGDPILYQHLF*FFGHPEVYI 727
           A+  T+           G + +L+T  NL     FDPA GGDP+L+QHLF F+ HP VYI
Sbjct: 213 AIYATSCIQVLATPVI-GLLLVLVTVENLFGFGMFDPARGGDPVLFQHLFWFYSHPAVYI 271

Query: 728 LILPGXGII 754
           ++LP  G++
Sbjct: 272 MVLPSFGVM 280


>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
           Bacteria|Rep: Cytochrome c oxidase subunit I type -
           Anaeromyxobacter sp. Fw109-5
          Length = 555

 Score =  111 bits (267), Expect = 2e-23
 Identities = 68/248 (27%), Positives = 102/248 (41%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
           + + +HK IG ++                    EL  PG  I D   YN + T H     
Sbjct: 30  LLTQDHKRIGVMFLVATTISFALGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMI 89

Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
                        N L+P+++GA D+AFP++N + F              +V+ GA TG 
Sbjct: 90  FLFMIPAIPSGFGNFLLPIMIGAKDVAFPKLNLLSFYVYLAGAVVALFG-MVQGGADTGW 148

Query: 371 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
           T Y P S+    +   V L  F L   G SS                    + +LPLFV 
Sbjct: 149 TFYTPYSTTTITKVVPVLLGAFIL---GFSSILTGLNFIVTTHTMRAPGMGWTRLPLFVW 205

Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 730
           ++  T+            ++ ++  +       FDPA GGDP+L+QH F F+ HP VYI+
Sbjct: 206 SIYATSVIQILATPVLGMSLLLVAVEHAFGWGIFDPARGGDPVLFQHFFWFYSHPAVYIM 265

Query: 731 ILPGXGII 754
           +LP   +I
Sbjct: 266 VLPAMAVI 273


>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
           Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
           - Aeropyrum pernix
          Length = 815

 Score =  110 bits (265), Expect = 3e-23
 Identities = 75/248 (30%), Positives = 103/248 (41%), Gaps = 2/248 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
           I +T+HKDIG LY                    +L  P S       Y   VT H     
Sbjct: 16  ITTTDHKDIGLLYLVTSIAFLLIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIML 75

Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG 367
                        N +VPL +GA D+AFPR+N + +                E+GA   G
Sbjct: 76  LWFASPFAFGLA-NYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVG 134

Query: 368 *TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 547
            T+Y PL++ I   G  +DLA  ++ L  +S                     + ++P+F 
Sbjct: 135 WTLYAPLTARIYTPGIGLDLAALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFT 194

Query: 548 *AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF-DPAGGGDPILYQHLF*FFGHPEVY 724
            ++  T                +LL DRNL T FF +PAGG   +L+ HLF FFGHPEVY
Sbjct: 195 WSILFTVILMLWAFPPLMVGGALLLLDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPEVY 252

Query: 725 ILILPGXG 748
           IL+ P  G
Sbjct: 253 ILLFPALG 260


>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
           Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
           1 - Corynebacterium glutamicum (Brevibacterium flavum)
          Length = 584

 Score =  109 bits (262), Expect = 7e-23
 Identities = 71/247 (28%), Positives = 101/247 (40%), Gaps = 1/247 (0%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
           +T+HK +G +Y                   AEL  PG     ++ +N + T H       
Sbjct: 35  TTDHKQLGIMYIIMSFSFFFLGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLL 94

Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*T 373
                      N ++PL +GAPD+AFPR+N   F              +   GA   G T
Sbjct: 95  YGTPIVWGFA-NYVLPLQIGAPDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWT 153

Query: 374 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 553
           +Y PLS  I   G   D+ I  +   GI S                   +  ++P+F   
Sbjct: 154 MYSPLSDAIHSPGLGSDMWIVGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWN 213

Query: 554 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 733
           + + +            A   +L DR L    +DPA GG  +L+QHLF FFGHPEVY+L 
Sbjct: 214 IFVVSVLALLIFPLLLAAALGVLYDRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVLA 272

Query: 734 LPGXGII 754
           LP  GI+
Sbjct: 273 LPFFGIV 279


>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
           Bacteria|Rep: Cytochrome c oxidase subunit I -
           Synechococcus sp. (strain CC9311)
          Length = 564

 Score =  109 bits (261), Expect = 9e-23
 Identities = 72/249 (28%), Positives = 102/249 (40%), Gaps = 3/249 (1%)
 Frame = +2

Query: 14  YSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXX 193
           ++T+ K IG  Y                    EL  P + + D  +YN + T H      
Sbjct: 32  FNTDAKVIGIQYIATAMLFLLVGGLLAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLF 91

Query: 194 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG* 370
                       N L+P ++GAPD+AFP++N   F                  G A +G 
Sbjct: 92  LFLFPILNGFN-NLLIPTMIGAPDMAFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGW 150

Query: 371 TVYPPLS--SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
             YPP+S  + + H      L I ++ L+GISS                    F ++P+F
Sbjct: 151 WSYPPMSLQNPLGHFINGEFLWILAVALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVF 210

Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
           V                  G   +LL D +  TSFF P GGGDP+L+QH F F+ HP VY
Sbjct: 211 VWTAWAAQTIQLIGLPALTGGAVMLLFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVY 270

Query: 725 ILILPGXGI 751
           +L+LP  GI
Sbjct: 271 VLVLPVFGI 279


>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
           1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
           thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
           (EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
           thermophilus (strain HB8 / ATCC 27634 / DSM 579)
          Length = 791

 Score =  105 bits (253), Expect = 9e-22
 Identities = 65/247 (26%), Positives = 99/247 (40%), Gaps = 1/247 (0%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
           + +HK IG +Y                    +L  P +     + YN I+T H       
Sbjct: 21  TVDHKKIGLMYTATAFFAFALAGVFSLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFF 80

Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*T 373
                      N +VPL+LGA D+A PR+N   +                  GA   G T
Sbjct: 81  FIIQAGLTGFGNFVVPLMLGARDVALPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWT 140

Query: 374 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 553
            Y P S   A     VD  + ++ L G SS                   S  ++P++V +
Sbjct: 141 FYYPFS---AQSESGVDFYLAAILLLGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWS 197

Query: 554 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 733
           V   +            A  ++L +R +  S+F+PA GGDP+L+Q  F F+ HP VY+++
Sbjct: 198 VFAASVLNLFSLAGLTAATLLVLLERKIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVML 257

Query: 734 LPGXGII 754
           LP  GI+
Sbjct: 258 LPYLGIL 264


>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
           Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
           borealis
          Length = 513

 Score =  104 bits (250), Expect = 2e-21
 Identities = 59/127 (46%), Positives = 68/127 (53%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
           + STNHKD GTL                    AELG PG+L+GDDQ  N IVTAHA    
Sbjct: 8   LXSTNHKDXGTLXXIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMI 67

Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
                        N LVPL++GAPD+AFPR+NN+ F               VE GAGTG 
Sbjct: 68  FXMXMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGW 127

Query: 371 TVYPPLS 391
           TVYPPL+
Sbjct: 128 TVYPPLA 134


>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
           Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
           1 - Beggiatoa sp. PS
          Length = 525

 Score =  104 bits (249), Expect = 3e-21
 Identities = 70/245 (28%), Positives = 101/245 (41%), Gaps = 2/245 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDD-QIYNTIVTAHAXXX 187
           I++T+HK +G LY                    EL   G  I DD  +YNT +  H    
Sbjct: 9   IFTTDHKRVGILYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAM 68

Query: 188 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 367
                         N  +PL++GA D+AFPR+N +                 + +     
Sbjct: 69  ILAFQIPALTGFFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIM 128

Query: 368 *TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 547
            T YPP S  I H   +     FS+ L G +S                    +++L +FV
Sbjct: 129 WTGYPPYSI-ITHGNTA--FYTFSVLLLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFV 185

Query: 548 *AVGITAFXXXXXXXXXAG-AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
            A  + AF          G A+T+L  D+ + T FFD A GGD + YQ+LF F+ HP VY
Sbjct: 186 WAT-LAAFVLQLIFVPVLGTAVTMLTFDKYIGTHFFDAAAGGDALTYQNLFWFYSHPAVY 244

Query: 725 ILILP 739
           ++ LP
Sbjct: 245 VIFLP 249


>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
           (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
           subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
           Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
           (Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
           subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
           subtilis
          Length = 649

 Score =  101 bits (243), Expect = 1e-20
 Identities = 67/247 (27%), Positives = 96/247 (38%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
           I + +HK +G +Y                   A+L  P +   D   YN I T H     
Sbjct: 48  ITTVDHKKLGIMYIISAVIMLFRGGVDGLMMRAQLALPNNSFLDSNHYNEIFTTHGTIMI 107

Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
                        N +VPL +GA D+AFP +NN+ F              ++      G 
Sbjct: 108 IFMAMPFLIGLI-NVVVPLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGW 166

Query: 371 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
           T Y PL+SN    G   +  +  L +AGI +                   +  ++P+F  
Sbjct: 167 TSYMPLASNDMSPGPGENYYLLGLQIAGIGTLMTGINFMVTILKMRTKGMTLMRMPMFTW 226

Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 730
              IT             A+ +L  DR     FF    GG P+L+ +LF  +GHPEVYI+
Sbjct: 227 TTLITMVIIVFAFPVLTVALALLSFDRLFGAHFFTLEAGGMPMLWANLFWIWGHPEVYIV 286

Query: 731 ILPGXGI 751
           ILP  GI
Sbjct: 287 ILPAFGI 293


>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
           cellular organisms|Rep: Cytochrome C oxidase subunit I
           /III - Pyrobaculum aerophilum
          Length = 800

 Score =  101 bits (242), Expect = 2e-20
 Identities = 74/257 (28%), Positives = 106/257 (41%), Gaps = 11/257 (4%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGN--PGSLIGD---DQIYNTIVTAHAX 181
           +TN   IG LY                     + N  PGS + D   + +Y   ++ H  
Sbjct: 11  TTNAHYIGILYILLSIINFVLAGIAAMYMRLTIANTPPGSPVQDPFNELLYTWFMSLHGL 70

Query: 182 XXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGA 358
                           N LVP ++GAPD+ +PRIN + F              +  ++G 
Sbjct: 71  GMLLLFAMQAVAGAA-NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGD 129

Query: 359 GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLP 538
             G T+YPPLS+    +   VDL +  + +AG SS                       + 
Sbjct: 130 SIGWTLYPPLST--ISKSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMS 187

Query: 539 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*F 703
           LF  +V   +          A    +LL +R+L   FF     DPA  GDP L+QH+F F
Sbjct: 188 LFAWSVLAASMLMVTALPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWF 247

Query: 704 FGHPEVYILILPGXGII 754
           FGHPEVYIL+LP  G++
Sbjct: 248 FGHPEVYILVLPAMGLV 264


>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
           oxidase, subunit 1; n=2; Thermoprotei|Rep:
           Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
           Cenarchaeum symbiosum
          Length = 508

 Score =  101 bits (242), Expect = 2e-20
 Identities = 73/249 (29%), Positives = 105/249 (42%), Gaps = 1/249 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXX 187
           ++ST+H D+G LY                   AEL  PG+  I D   +N + T H    
Sbjct: 15  MFSTHHTDVGLLYLISSLGFLFLGGALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTL 74

Query: 188 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 367
                         N  VP+++   D+A+P++N I F                 +   T 
Sbjct: 75  IFLFILPFASAVG-NYFVPIMVRYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT- 132

Query: 368 *TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 547
               PP S  I+  G + D+ IF L + GISS                   S  Q+PL  
Sbjct: 133 ----PPYSV-ISAPGPAADMWIFGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLA 187

Query: 548 *AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYI 727
            +   ++          A A+ +LLTDR   + FF+PA GGDPI Y HLF F  HPEVY+
Sbjct: 188 WSYLSSSLIVLVALPTFAAALLMLLTDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYV 247

Query: 728 LILPGXGII 754
           L++P  G++
Sbjct: 248 LVIPAIGMM 256


>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
           1.9.3.1) (Cytochrome c oxidase polypeptide I)
           (Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
           aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
           oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
           polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
           subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
          Length = 622

 Score = 99.1 bits (236), Expect = 1e-19
 Identities = 61/245 (24%), Positives = 98/245 (40%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
           + +HK I  LY                    +L  P +     Q YN ++T H       
Sbjct: 21  TVDHKKIAILYLVAGGFFFLVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFL 80

Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
                      N +VPL +GA D++FP +N + F               +      G T 
Sbjct: 81  AAMPLLFALM-NAVVPLQIGARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTS 139

Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 556
           Y  LS  +  +G  +D  +  L ++G+ +                   ++ +LPLF    
Sbjct: 140 YASLS--LHSKGHGIDFFVLGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTT 197

Query: 557 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 736
            + +             + +++ DR   T+FF+P  GG+ ++++HLF  FGHPEVYILIL
Sbjct: 198 FVASALILFAFPPLTVGLALMMLDRLFGTNFFNPELGGNTVIWEHLFWIFGHPEVYILIL 257

Query: 737 PGXGI 751
           P  GI
Sbjct: 258 PAFGI 262


>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
           Blastopirellula marina DSM 3645|Rep: Cytochrome c
           oxidase subunit I - Blastopirellula marina DSM 3645
          Length = 595

 Score = 97.1 bits (231), Expect = 4e-19
 Identities = 65/218 (29%), Positives = 95/218 (43%), Gaps = 15/218 (6%)
 Frame = +2

Query: 146 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 325
           + Y  +VT HA                 N L+PL++GA D+AFP +N + +         
Sbjct: 86  EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145

Query: 326 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 493
                  + +GA  G T YPPLS   ++    G +  L +  +   G+SS          
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205

Query: 494 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----- 658
                    +  +LPL + A+ ITA            A  ++L DR + T FF P     
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGLVV 265

Query: 659 ------AGGGDPILYQHLF*FFGHPEVYILILPGXGII 754
                 AGGG P+L+QHLF F+ HP VYI+ILP  G++
Sbjct: 266 NNSPMAAGGGQPLLWQHLFWFYSHPAVYIMILPAMGMV 303


>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
           Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
           Roseovarius nubinhibens ISM
          Length = 818

 Score = 96.3 bits (229), Expect = 7e-19
 Identities = 63/246 (25%), Positives = 93/246 (37%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
           + NH D+G ++                   A+L  P S     + YN + T H       
Sbjct: 26  TVNHTDLGRMFLTVAVFFFVVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFL 85

Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
                        L+P +LG+ D+AFPR+    F              +      +G  +
Sbjct: 86  FAIPVFEGFAVY-LLPKLLGSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFM 144

Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 556
           YPPLSS +   G + D  +  +    IS+                   S  ++P+F    
Sbjct: 145 YPPLSSTLGAPGINSDFWLIGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYA 204

Query: 557 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 736
            +TA               +L  +R  +  FF  A GGD +L+QHLF  FGHPEVYI+ L
Sbjct: 205 LVTAVMILTGFPPLILGSILLELERAFDMPFFQAAAGGDALLWQHLFWLFGHPEVYIIFL 264

Query: 737 PGXGII 754
           P  G I
Sbjct: 265 PAAGAI 270


>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
           Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
           cenocepacia MC0-3
          Length = 1004

 Score = 93.9 bits (223), Expect = 4e-18
 Identities = 64/246 (26%), Positives = 95/246 (38%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
           + +HK IG  Y                    +L  P + +     Y+++ T H       
Sbjct: 46  TVDHKRIGLRYIVTAFVFLLLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFL 105

Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
                      N L PL+LG+ D+AFPR+    +               +      G   
Sbjct: 106 YALPVLSGFA-NYLWPLMLGSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFN 164

Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 556
           Y PL+S     G ++D+    + L GIS+                   S D+LP+ V   
Sbjct: 165 YVPLTSLDYSAGANIDIYGLGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGT 224

Query: 557 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 736
              +          + A  +L  DRN  T FFD A GG P+L+QHLF  F HP VY+++L
Sbjct: 225 LTASVSNLVAVPSVSLAFLLLWLDRNAGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVL 284

Query: 737 PGXGII 754
           P  GI+
Sbjct: 285 PAMGIV 290


>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
           shibae DFL 12|Rep: Cytochrome-c oxidase -
           Dinoroseobacter shibae DFL 12
          Length = 853

 Score = 92.7 bits (220), Expect = 9e-18
 Identities = 60/246 (24%), Positives = 95/246 (38%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
           + +H+ +G  +                    +L  P +     + YN + T H       
Sbjct: 52  AVSHRAVGKRFLITGFIFFLIAGVFALLVRLQLMVPENTFLSSETYNQLFTMHGTIMMFL 111

Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
                        L+PL++GA D+ FPR+    +              + +     G  +
Sbjct: 112 FAIPMLEGFAVY-LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFM 170

Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 556
           Y PLS++    G S D  +  + LA I+S                   S  ++P+ +  +
Sbjct: 171 YVPLSTSAYTEGLSADFWLIGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYL 230

Query: 557 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 736
             TAF              +L  +R L   FFD   GGDP+L+QHLF  FGHPEVYI+ L
Sbjct: 231 LATAFMIAIAFPPLIIGSILLEAERLLGLPFFDHTLGGDPLLWQHLFWLFGHPEVYIIFL 290

Query: 737 PGXGII 754
           P  G++
Sbjct: 291 PAAGMV 296


>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
           Bacteria|Rep: Cytochrome C oxidase subunit I -
           Symbiobacterium thermophilum
          Length = 628

 Score = 91.9 bits (218), Expect = 2e-17
 Identities = 66/252 (26%), Positives = 97/252 (38%), Gaps = 4/252 (1%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
           + + +HK IG +Y                    +L  PG  +   + +N + T HA    
Sbjct: 24  VATVDHKRIGIMYGVTGFFFFLVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMI 83

Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG--- 361
                        N  +PL++GA D+AFPR+N   +              ++    G   
Sbjct: 84  FLGVMPLLSAFM-NYFLPLMIGARDVAFPRLNAFSYWIYLFGALFINAGWLMGTAGGHVP 142

Query: 362 -TG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLP 538
             G   Y  L+S     G   D     L L GI +                   +  ++P
Sbjct: 143 DIGWFGYANLTSVQFTSGLGPDFWTLGLLLLGIGTLVSGFNFIVTILNMRAPGMTLMKMP 202

Query: 539 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPE 718
           +FV    +T+            A+ +L+ DR    +FF+   GG  + YQHLF  FGHPE
Sbjct: 203 VFVWTTLVTSAIIIFAFPSVTVALIMLMFDRTFAANFFEVLRGGSVVFYQHLFWTFGHPE 262

Query: 719 VYILILPGXGII 754
           VYILILP  GII
Sbjct: 263 VYILILPAMGII 274


>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
           (EC 1.9.3.1) (Alternative cytochrome c oxidase
           polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
           subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
           oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
           oxidase polypeptide I) (Cytochrome BB3 subunit 1)
           (Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
          Length = 591

 Score = 91.9 bits (218), Expect = 2e-17
 Identities = 74/263 (28%), Positives = 102/263 (38%), Gaps = 15/263 (5%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSL-IGDDQIYNTIVTAHAXXX 187
           ++S + K I   Y                    +LG PG+    D   Y   +T H    
Sbjct: 33  VFSQDAKVIAIQYSLTASAIGLVALVLSWLMRLQLGFPGTFSFIDANQYLQFITMHGMIM 92

Query: 188 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGT 364
                         N L+PL++GA D+ FP +N + +               V  G  G 
Sbjct: 93  VIYLLTALFLGGFGNYLIPLMVGARDMVFPYVNMLSYWVYLLAVLVLASAFFVPGGPTGA 152

Query: 365 G*TVYPP--LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLP 538
           G T+YPP  + S    +   + L + SL L  I                     +  +LP
Sbjct: 153 GWTLYPPQAILSGTPGQDWGIVLMLSSLILFIIGFTMGGLNYVVTVLQARTRGMTLMRLP 212

Query: 539 LFV*AV-GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA----------GGGDPILY 685
           L V  +   T            G++ +LL DR L TSFF P           GGG P+L+
Sbjct: 213 LTVWGIFTATVMALLAFPALFVGSVMLLL-DRLLGTSFFMPTLVEMGQLSKYGGGSPLLF 271

Query: 686 QHLF*FFGHPEVYILILPGXGII 754
           QHLF FFGHPEVYI+ LP  GI+
Sbjct: 272 QHLFWFFGHPEVYIVALPAFGIV 294


>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
           Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
           Aplidium nordmanni
          Length = 227

 Score = 91.5 bits (217), Expect = 2e-17
 Identities = 84/227 (37%), Positives = 97/227 (42%), Gaps = 1/227 (0%)
 Frame = +2

Query: 26  HKDIGTL-YXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 202
           HKD GTL +                     L   G +IG  QI    VTA A        
Sbjct: 1   HKDXGTLXFXFXXWSAXFXGXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFV 60

Query: 203 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 382
                      L PL +GAP +A PR+ N+ F               +  G G    VYP
Sbjct: 61  MPTLXGGFGXXLXPLXVGAPXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYP 120

Query: 383 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 562
           P SS +AH   +VDL IF LHLAGISS                   ++    LF      
Sbjct: 121 PXSSGLAHSSGAVDLGIFXLHLAGISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVX 180

Query: 563 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 703
                       A AIT+L   R  N SFF P   G P  +   F F
Sbjct: 181 XXXXLILSXPVLAAAITMLXXXRXXNXSFFXPXXXGXPXXFPTFFXF 227


>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
           Proteobacteria|Rep: Quinol oxidase subunit I -
           Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
          Length = 825

 Score = 90.6 bits (215), Expect = 4e-17
 Identities = 60/246 (24%), Positives = 94/246 (38%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
           + NH D+G ++                   A+L +P S     + Y  + T H       
Sbjct: 26  TVNHTDLGRMFLGASVVFFLIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFL 85

Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
                        L+P +LG+ D+A+PR++   F              +      +G  +
Sbjct: 86  FAIPMFEGLTIY-LLPKMLGSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFM 144

Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 556
           YPPL+S +   G + D  +  +    IS+                   S D++P++    
Sbjct: 145 YPPLASTLGSPGINSDFWLLGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIYGWYA 204

Query: 557 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 736
            +TA               +L  +R     FF  A GGD +L+QHLF  FGHPEVYI+ L
Sbjct: 205 LVTATMILTGFPPLILGSILLELERAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVYIIFL 264

Query: 737 PGXGII 754
           P  G I
Sbjct: 265 PAAGAI 270


>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
           precursor [Contains: Truncated non-functional cytochrome
           oxidase 1; Intron-encoded endonuclease aI2 (EC
           3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
           intron-encoded endonuclease aI2 precursor [Contains:
           Truncated non-functional cytochrome oxidase 1;
           Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
           maydis (Smut fungus)
          Length = 533

 Score = 90.2 bits (214), Expect = 5e-17
 Identities = 54/132 (40%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
           +YSTN KDIGTLY                    EL  PG   L GD Q+YN I+TAHA  
Sbjct: 5   LYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFV 64

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N LVP+++GAPD+AFPR+NNI F               VE GAGT
Sbjct: 65  MIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGT 124

Query: 365 G*TVYPPLSSNI 400
           G TV   LS  I
Sbjct: 125 GWTVKCKLSQII 136


>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
           Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
           Mesorhizobium sp. (strain BNC1)
          Length = 845

 Score = 89.8 bits (213), Expect = 6e-17
 Identities = 65/249 (26%), Positives = 94/249 (37%), Gaps = 1/249 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNP-GSLIGDDQIYNTIVTAHAXXX 187
           I + N++ IG LY                    +L  P   L+G D  YN I T H    
Sbjct: 34  ISAVNNQVIGILYVGAAFLFFILAGILGLIMRTQLAVPENDLVGQD-FYNQIFTVHGTTM 92

Query: 188 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 367
                           L+P +L A D+ FPR++                    +     G
Sbjct: 93  MFLFAVPVVEALGVM-LLPQMLAARDLPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKGG 151

Query: 368 *TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 547
             +YPPL+      G + D  +  +    IS+                   S  ++P+F 
Sbjct: 152 WFMYPPLTLKEYSPGDNADFWLLGIGFIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIFA 211

Query: 548 *AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYI 727
            A+ I A            A  +L  +R+    FF    GGDP+L+QHLF FFGHPEVYI
Sbjct: 212 WAMLIFAAMIMIAFPAVILATMLLEIERSFGWPFFTAERGGDPLLWQHLFWFFGHPEVYI 271

Query: 728 LILPGXGII 754
           + LP  G++
Sbjct: 272 IFLPAAGLV 280


>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
           n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
           subunit I - Chromobacterium violaceum
          Length = 680

 Score = 89.4 bits (212), Expect = 8e-17
 Identities = 68/248 (27%), Positives = 96/248 (38%), Gaps = 3/248 (1%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNP-GSLIG--DDQIYNTIVTAHAXXX 187
           S +HK IG +Y                    +L    G   G    + Y+ I TAH    
Sbjct: 52  SVDHKKIGVMYIIVAMIMLLRGFADALMMRTQLAMATGGAHGVFPPEHYDQIFTAHGVIM 111

Query: 188 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 367
                         N +VPL +GA D+AFP +N++ F               V N A TG
Sbjct: 112 IIFMAMPFMTGLM-NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTG 170

Query: 368 *TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 547
              YPPL+         VD  I++L ++GI +                       +P+F 
Sbjct: 171 WVAYPPLAELGFSPDVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFT 230

Query: 548 *AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYI 727
                             GA+ +L  DR L+  FF    GG+ ++Y +LF  +GHPEVYI
Sbjct: 231 WTCTWANVLIATSFPILTGALAMLALDRYLDFHFFTAELGGNAMMYLNLFWAWGHPEVYI 290

Query: 728 LILPGXGI 751
           L+LP  GI
Sbjct: 291 LVLPAFGI 298


>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
           flagellatus KT|Rep: Cytochrome-c oxidase -
           Methylobacillus flagellatus (strain KT / ATCC 51484 /
           DSM 6875)
          Length = 631

 Score = 88.6 bits (210), Expect = 1e-16
 Identities = 58/215 (26%), Positives = 87/215 (40%)
 Frame = +2

Query: 110 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 289
           +L  P +   D + YN + + H                    ++PL+LG  D+ FPR+N 
Sbjct: 64  QLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLMLGTRDMTFPRLNA 122

Query: 290 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 469
             +              ++      G   YPPL+      G  +D     +    IS+  
Sbjct: 123 FGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLDFYTTVVTFMEISALV 182

Query: 470 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 649
                            S +++P+FV AV + +F           A  +L  DR     F
Sbjct: 183 AAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPPLVIASLMLALDRMAGMHF 242

Query: 650 FDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 754
           F  A  GDPIL+QHLF FFGHPEVYI+ +P  G++
Sbjct: 243 FT-AASGDPILWQHLFWFFGHPEVYIIFIPALGMV 276


>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
           polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
           subunit 1); n=20; cellular organisms|Rep: Alternative
           Cytochrome c oxidase polypeptide I (Cytochrome BB3
           subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
           marina ATCC 23134
          Length = 635

 Score = 88.6 bits (210), Expect = 1e-16
 Identities = 65/218 (29%), Positives = 94/218 (43%), Gaps = 14/218 (6%)
 Frame = +2

Query: 140 DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 319
           + + Y  +VT H                  N L+PL +GA D+A   +N + +       
Sbjct: 98  EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSS 157

Query: 320 XXXXXXXIVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXX 487
                   +E G  +G   +YPPLS+    ++  G  + + + S+ L  IS         
Sbjct: 158 VIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYI 217

Query: 488 XXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP--- 658
                      SF +LPL + A  ITA            A  +L+ DR+L TSFF     
Sbjct: 218 TTVINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFFLSEIY 277

Query: 659 -AG------GGDPILYQHLF*FFGHPEVYILILPGXGI 751
            AG      GG P+L+QHLF F GHPEVYI+++P  GI
Sbjct: 278 IAGEALHHQGGSPVLFQHLFWFLGHPEVYIVLIPALGI 315


>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
           Watasenia scintillans|Rep: Cytochrome c oxidase subunit
           I - Watasenia scintillans (Sparkling enope)
          Length = 217

 Score = 87.8 bits (208), Expect = 3e-16
 Identities = 51/118 (43%), Positives = 61/118 (51%)
 Frame = +2

Query: 110 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 289
           ELG PGSL+ DDQ+YN +VTAH                  N LVPL+LGAPD+AFPR+NN
Sbjct: 24  ELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNN 83

Query: 290 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 463
           + F              +   G      +  PL       G SVDLAIF LHLAG+SS
Sbjct: 84  MSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLHLAGVSS 139


>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
           Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
           Sulfolobus acidocaldarius
          Length = 788

 Score = 86.6 bits (205), Expect = 6e-16
 Identities = 69/249 (27%), Positives = 98/249 (39%), Gaps = 1/249 (0%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 190
           +Y+TN  D+G +Y                    +L    +L   D  Y   VT H     
Sbjct: 11  LYTTNASDVGQMYIVLGIVALIIGSVNAALIRDQLSF-NNLNAVD--YYDAVTLHGIFMI 67

Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
                        N LVP ++GA D+ +P+IN + F              ++      G 
Sbjct: 68  FFVVMPLSTGFA-NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGW 125

Query: 371 TVYPPLS-SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 547
            +Y PLS     + G   +L   +L L+G+SS                    + ++PLFV
Sbjct: 126 YMYAPLSVETTVNYGLGTNLIQIALILSGLSSTLTGVNFVMTITKMKKV--PYLKMPLFV 183

Query: 548 *AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYI 727
                TA             +     +R   T FFD A GG P+L+Q LF FFGHPEVYI
Sbjct: 184 WGFFTTAILMIIAMPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYI 243

Query: 728 LILPGXGII 754
           LILP  G++
Sbjct: 244 LILPAMGLV 252


>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
           (Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
           1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
           Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
           oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
           BO(3) subunit 1) - Pseudomonas putida
          Length = 672

 Score = 86.6 bits (205), Expect = 6e-16
 Identities = 67/250 (26%), Positives = 96/250 (38%), Gaps = 5/250 (2%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAEL-----GNPGSLIGDDQIYNTIVTAHAX 181
           + +HK IG +Y                    +L     G+ G L    + Y+ I TAH  
Sbjct: 51  TVDHKKIGVMYIIVAMVMLLRGFADAIMMRTQLAAATGGSEGYL--PPEHYDQIFTAHGV 108

Query: 182 XXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG 361
                           N  VPL +GA D+AFP +N++ F               V   A 
Sbjct: 109 IMIIFMAMPFFTGLM-NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAK 167

Query: 362 TG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 541
           TG   YPPL+      G  VD  I++L L+G+ +                       +P+
Sbjct: 168 TGWVAYPPLAGIQYSPGVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPI 227

Query: 542 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 721
           F                    A+ +L  DR L+   F    GG+P++Y +LF  +GHPEV
Sbjct: 228 FTWTCTWANVLIVASFPILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGHPEV 287

Query: 722 YILILPGXGI 751
           YILILP  G+
Sbjct: 288 YILILPAFGV 297


>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
           polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
           (Liverwort)
          Length = 434

 Score = 84.2 bits (199), Expect = 3e-15
 Identities = 45/124 (36%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXX 184
           ++STNHKDIGTLY                    EL  PG+ I  G+ Q+YN ++TAHA  
Sbjct: 9   LFSTNHKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFL 68

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N  VP+++G+PD+AFPR+NNI F              +VE G G+
Sbjct: 69  MIFFMVMPAMIGGFGNWFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGS 128

Query: 365 G*TV 376
           G TV
Sbjct: 129 GWTV 132


>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
           Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
           eutropha (strain C71)
          Length = 703

 Score = 83.8 bits (198), Expect = 4e-15
 Identities = 65/247 (26%), Positives = 93/247 (37%), Gaps = 2/247 (0%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAE--LGNPGSLIGDDQIYNTIVTAHAXXXX 190
           ST+HK IG +Y                   A+  +G  G  +  D  +  + + H     
Sbjct: 73  STDHKKIGIMYVVLALVMLTRAIAEAVLMRAQGAVGLGGGFLSSDH-FAQLFSTHGTIMI 131

Query: 191 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 370
                        N +VPL +GA D+AFP +N+I                +V   +  G 
Sbjct: 132 FFMAMPFLTGLI-NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGW 190

Query: 371 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
             YPP +  + + G  VD  I+SL LA + S                       +PLF  
Sbjct: 191 FGYPPYTETLYNPGIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTW 250

Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 730
               TA                L  DR L+  FF    GG+ + + ++F  FGHPEVYIL
Sbjct: 251 TALCTAIMMIFAMPPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYIL 310

Query: 731 ILPGXGI 751
           ILP  G+
Sbjct: 311 ILPAFGV 317


>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
           Deinococcus|Rep: Cytochrome c oxidase, subunit I -
           Deinococcus radiodurans
          Length = 820

 Score = 83.4 bits (197), Expect = 5e-15
 Identities = 59/245 (24%), Positives = 87/245 (35%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
           +T+HK IG LY                    +L  P   +     YN ++T HA      
Sbjct: 29  TTDHKKIGLLYIIVSILGFCLGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFF 88

Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
                      N  +PL LG  D+A PR+N                          G T 
Sbjct: 89  FLIPLGLFGFGNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTF 148

Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 556
           Y PL+ +    G SV +    L+  G+ S                      ++P+F  ++
Sbjct: 149 YYPLTMDGNQTGVSVFMVAVILN--GLGSLLGSANFAATIVNLRAPGMGLWKMPVFAWSI 206

Query: 557 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 736
             T+            A  +   +  L  S F+P  GG P+LYQ  F F+ HP VY+++L
Sbjct: 207 FATSILQLLTLGGLTAAALLTYLEIKLGLSMFNPGIGGVPVLYQQFFWFYSHPAVYVMLL 266

Query: 737 PGXGI 751
           P  GI
Sbjct: 267 PYLGI 271


>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
           Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
           Haloarcula marismortui (Halobacterium marismortui)
          Length = 854

 Score = 81.8 bits (193), Expect = 2e-14
 Identities = 64/259 (24%), Positives = 96/259 (37%), Gaps = 13/259 (5%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
           +TNHKDIG LY                    EL + G+ +     YN  V+ H       
Sbjct: 19  TTNHKDIGVLYLITALFFLVFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFW 78

Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
                      N LVPL +GA D+AFPR+N + +                      G T+
Sbjct: 79  FISPFAFGFA-NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTM 137

Query: 377 YPPLSSN--IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
           Y PL++   I   G      + +L +   +                        +P+F  
Sbjct: 138 YAPLNTPAYIPGEGLGATSVVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSL 197

Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF-----------DPAGGGDPILYQHLF 697
           ++ +T +           A+ IL +D  L T++F           D    G  +L+ HLF
Sbjct: 198 SINLTVWMMLFAFAALLAALMILASDHILGTTYFQYSIDGTTMATDADNPGASLLWAHLF 257

Query: 698 *FFGHPEVYILILPGXGII 754
            FFGHPEVYI+  P  G++
Sbjct: 258 WFFGHPEVYIVFFPALGVM 276


>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
           Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
           sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
          Length = 607

 Score = 81.4 bits (192), Expect = 2e-14
 Identities = 49/173 (28%), Positives = 75/173 (43%)
 Frame = +2

Query: 236 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 415
           L+P +LGA D+ FPR++   F               V      G  + PPL++     G 
Sbjct: 167 LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGY 226

Query: 416 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 595
           + D  +  +    IS+                   +  ++P+F  A+ + A         
Sbjct: 227 NADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPA 286

Query: 596 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 754
              A  +L  +R  +  FF    GGDP+L+QHLF FFGHPEVYI+ LP  G++
Sbjct: 287 VILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLPAAGMV 339


>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
           cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
           cretinus
          Length = 153

 Score = 81.0 bits (191), Expect = 3e-14
 Identities = 39/65 (60%), Positives = 45/65 (69%)
 Frame = +2

Query: 245 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 424
           L+LGAPD+AFPR+NN+ F              +VENGAGTG TVYPPLSS  AH G SVD
Sbjct: 1   LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60

Query: 425 LAIFS 439
           LAI+S
Sbjct: 61  LAIYS 65



 Score = 60.5 bits (140), Expect = 4e-08
 Identities = 29/56 (51%), Positives = 32/56 (57%)
 Frame = +1

Query: 544 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 711
           CM C +Y        TCFS S+Y IIN  K KY IF   W   P  +STFILIFWT
Sbjct: 97  CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152


>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
           Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
           bacterium (strain Ellin345)
          Length = 595

 Score = 80.6 bits (190), Expect = 4e-14
 Identities = 64/229 (27%), Positives = 94/229 (41%), Gaps = 16/229 (6%)
 Frame = +2

Query: 116 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 295
           G PG ++   + Y +++T H                  N  +P+ +GA D+AFPR N + 
Sbjct: 75  GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133

Query: 296 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 460
           F               + +G   +G T Y  LS+    A  G +    ++ + +A   I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193

Query: 461 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 640
           S                   S  ++P+   A  IT+            A  +L  DR   
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253

Query: 641 TSFFDPAG-----------GGDPILYQHLF*FFGHPEVYILILPGXGII 754
           TSFF P+G           GG  +L+QHLF FFGHPEVYI ILP  GI+
Sbjct: 254 TSFFIPSGLVFNDHVIPHGGGSALLWQHLFWFFGHPEVYIAILPAMGIV 302


>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
           n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
           polypeptide I/III - Picrophilus torridus
          Length = 841

 Score = 80.6 bits (190), Expect = 4e-14
 Identities = 69/257 (26%), Positives = 99/257 (38%), Gaps = 11/257 (4%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG------SLIG----DDQIYNT 160
           I++TNHK IG LY                    +L  P       S+      D   YN 
Sbjct: 27  IFTTNHKQIGLLYILTSLFFFIGGGVMALLMRVQLAIPRYDLVKYSIFSGRFLDALQYNQ 86

Query: 161 IVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXX 340
           +VT H                    L+PL +G+ D+ +PR+N + +              
Sbjct: 87  LVTIHGLTMLIWFLGPLGTGFGIY-LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGF 145

Query: 341 IVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXX 517
            +  G   TG TVY PLSS         D A  ++ L GI +                  
Sbjct: 146 FLPGGNLDTGWTVYEPLSSFKFTPYLGADTAAAAVVLRGIGTIIASTEILATIFKARAKG 205

Query: 518 XSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 697
                LPLFV AV   A           G   +LL    ++ S++    GG  +++++LF
Sbjct: 206 YRMMNLPLFVWAVFWVAAISWFVFPEITGLFFLLLVGNLMHASYYISNYGG-ALMWENLF 264

Query: 698 *FFGHPEVYILILPGXG 748
            +FGHPEVY+L+LPG G
Sbjct: 265 WYFGHPEVYLLLLPGTG 281


>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
           Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
           Tetrahymena pyriformis
          Length = 698

 Score = 79.4 bits (187), Expect = 9e-14
 Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
 Frame = +2

Query: 365 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 535
           G T   P SSNI + G  S D+ I S+  AGIS+                      +  +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342

Query: 536 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 715
           P    ++ +T             A+ ++  DR+  T+FF+ A GGDPIL QHLF FFGHP
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402

Query: 716 EVYILILPGXGII 754
           EVY+LI+P  G I
Sbjct: 403 EVYVLIIPTFGFI 415



 Score = 47.6 bits (108), Expect = 3e-04
 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
 Frame = +2

Query: 2   RK*IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAH 175
           +K +Y+ NHK I   Y                    EL +P S    GD   Y  +VTAH
Sbjct: 52  KKYVYTINHKRIAINYLYFSMVTGLSGAALATMIRMELAHPESPFFKGDSLRYLQVVTAH 111

Query: 176 AXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 298
                             N L+P  +G+ D+A+PR+N+I F
Sbjct: 112 GLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYPRLNSIGF 152


>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
           n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
           ubiquinol oxidase subunit I - Carsonella ruddii (strain
           PV)
          Length = 606

 Score = 77.8 bits (183), Expect = 3e-13
 Identities = 49/174 (28%), Positives = 75/174 (43%)
 Frame = +2

Query: 230 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 409
           N ++PL +G+ D+AFP +N + F              I+   A TG   YPPLS      
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178

Query: 410 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 589
              VD   +S+ ++GI +                    F+++ +F+     +        
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238

Query: 590 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 751
                 +  +  DR L+T F+    GG  +LY +L   +GHPEVYILILP  GI
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILPSFGI 292


>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
           Rhodobacteraceae|Rep: Cytochrome c, monohaem -
           Rhodobacter sphaeroides ATCC 17025
          Length = 878

 Score = 77.4 bits (182), Expect = 4e-13
 Identities = 54/241 (22%), Positives = 87/241 (36%)
 Frame = +2

Query: 17  STNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXX 196
           + N+ ++G  Y                    +L  PG+       +N   T H       
Sbjct: 54  AVNNSEVGVWYALTALAFMLCAGVLAVLMRVQLAVPGNDFLSADRFNQFFTMHGSAMMFL 113

Query: 197 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 376
                        L+P +LGA D+ FPR++   +              + +    +G  +
Sbjct: 114 FAVPMFEAISII-LLPALLGARDLPFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFM 172

Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 556
           YPPL++     G   D+ +  L    ++S                     + +PL+   V
Sbjct: 173 YPPLATQ--DEGLGSDIWLLGLSFIEVASIAAAVELIVGVLKCRPPGMRVNLMPLYAWYV 230

Query: 557 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 736
            +                 +   +R  +  FFDP  GGDP+L+QHLF  FGHPEVYI+ L
Sbjct: 231 LVVGGMILFAFPPLIAGDLLFEMERGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYIIFL 290

Query: 737 P 739
           P
Sbjct: 291 P 291


>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
           Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
           subunit I - Planctomyces maris DSM 8797
          Length = 606

 Score = 77.0 bits (181), Expect = 5e-13
 Identities = 55/217 (25%), Positives = 84/217 (38%), Gaps = 14/217 (6%)
 Frame = +2

Query: 146 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 325
           + Y  + T HA                 N L+PL++GA D+AFP++N + +         
Sbjct: 90  EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149

Query: 326 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 496
                    G   G T YP    L+      G +    +  +   G SS           
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209

Query: 497 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG---- 664
                   +F +LP+ +  + ITA               + + DR   T FF P+G    
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVIN 269

Query: 665 -------GGDPILYQHLF*FFGHPEVYILILPGXGII 754
                  GG P+L+QHLF F+ HP VYI++LP  G++
Sbjct: 270 NAAPTVGGGQPLLWQHLFWFYSHPAVYIMLLPIMGMV 306


>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
           Echinoida|Rep: Cytochrome c oxidase subunit I -
           Echinometra oblonga
          Length = 386

 Score = 75.8 bits (178), Expect = 1e-12
 Identities = 33/41 (80%), Positives = 36/41 (87%)
 Frame = +2

Query: 632 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 754
           N  T+FFDPAGGGD IL+QHLF FFGHPEVYILILPG G+I
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGMI 231


>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
           lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
           (Candida lipolytica)
          Length = 457

 Score = 75.8 bits (178), Expect = 1e-12
 Identities = 47/132 (35%), Positives = 59/132 (44%), Gaps = 2/132 (1%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
           ++STN KDI  LY                    EL N GS  L G+ Q +N ++TAHA  
Sbjct: 11  LFSTNAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAIL 70

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N L+PL+LGA D+AF R+NNI F              +VE GAGT
Sbjct: 71  MIFFFVMPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGT 130

Query: 365 G*TVYPPLSSNI 400
           G TV    SS +
Sbjct: 131 GWTVKKICSSKM 142


>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
           Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
           1 - Munidopsis verrucosus
          Length = 154

 Score = 72.5 bits (170), Expect = 1e-11
 Identities = 39/83 (46%), Positives = 48/83 (57%)
 Frame = +2

Query: 383 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 562
           PL+S+IAH G SVD+AIFSLHLAG+SS                   + D++PLF+ AV I
Sbjct: 72  PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131

Query: 563 TAFXXXXXXXXXAGAITILLTDR 631
           T           AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154



 Score = 35.5 bits (78), Expect = 1.4
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = +1

Query: 217 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 342
           W IWKL             P NK YKILT  PL Y    K+N
Sbjct: 28  WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69


>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
           cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
           cryptum (strain JF-5)
          Length = 689

 Score = 69.7 bits (163), Expect = 7e-11
 Identities = 46/175 (26%), Positives = 72/175 (41%)
 Frame = +2

Query: 230 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 409
           N +VPL +GA D+AFP +N +                 V + +  G     PL+      
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202

Query: 410 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 589
           G  VD  ++++ +  + +                   ++ +LP  V     T        
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262

Query: 590 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 754
                A+ +L  DR L T FF    GG+ +LY +LF  +GHPEVY ++LP  G I
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGFI 317


>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
           Kluyveromyces thermotolerans|Rep: Putative DNA
           endonuclease - Kluyveromyces thermotolerans (Yeast)
          Length = 542

 Score = 69.7 bits (163), Expect = 7e-11
 Identities = 42/124 (33%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 184
           +YSTN KDI  LY                    EL  PG+  L G+ Q++N +V  HA  
Sbjct: 6   LYSTNAKDIAILYFIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVL 65

Query: 185 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 364
                          N L+PL++GA D++F R+NNI F              +VE+GAGT
Sbjct: 66  MIFFLVMPALIGGFGNYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGT 125

Query: 365 G*TV 376
           G TV
Sbjct: 126 GWTV 129


>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
           Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
           subunit I - Myrmarachne sp. G FSC-2006
          Length = 129

 Score = 59.3 bits (137), Expect = 1e-07
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +2

Query: 341 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 463
           +VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12  MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52


>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
           Endopterygota|Rep: Cytochrome c oxidase subunit I -
           Copitarsia incommoda
          Length = 150

 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 28/41 (68%), Positives = 29/41 (70%)
 Frame = +1

Query: 631 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIXYN 753
           K KYIIF S W     F+STFILIFWT  SLYFNFT I YN
Sbjct: 7   KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFTSIWYN 47


>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
           Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
           subunit I - Tetragona dorsalis ziegleri
          Length = 111

 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 31/70 (44%), Positives = 40/70 (57%)
 Frame = +2

Query: 527 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 706
           DQ+ LF  ++ IT           AG IT+LL+DRN N  FF   GG  PIL+Q++   F
Sbjct: 12  DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71

Query: 707 GHPEVYILIL 736
           GH +V  LIL
Sbjct: 72  GHTDVLFLIL 81


>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
           Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
           - Celatoblatta vulgaris
          Length = 134

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 25/51 (49%), Positives = 29/51 (56%)
 Frame = +1

Query: 547 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 699
           M C +YS      +TC  WSYYN IN SKLKYI+F         F+ST IL
Sbjct: 84  MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134


>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
           Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
           I - Pachymerium ferrugineum
          Length = 219

 Score = 47.2 bits (107), Expect = 4e-04
 Identities = 37/140 (26%), Positives = 44/140 (31%)
 Frame = +1

Query: 223 IWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YR 402
           I KL             P NK +KIL  TPL Y  N    C K C + +NSLP     Y 
Sbjct: 62  IRKLNTPSNIGSTSHGFPPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYL 121

Query: 403 T*RKIRRSCYFFTTFSXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXX 582
           T    R   +F  T                                 CM   +YS     
Sbjct: 122 TLGPFRSYNHFCPTSCSSVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTS 181

Query: 583 XTTCFSWSYYNIINRSKLKY 642
            +     S+YNI    K KY
Sbjct: 182 FSPSIGSSHYNITYWPKPKY 201


>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
           oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
           Sub-unit I of an aa3-type cytochrome oxidase -
           Thiobacillus ferrooxidans (Acidithiobacillus
           ferrooxidans)
          Length = 627

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 39/172 (22%), Positives = 62/172 (36%)
 Frame = +2

Query: 236 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 415
           L+PL+LG  ++ FP++  + +                  G  TG   YPPL+ N    G 
Sbjct: 180 LIPLMLGTRNVVFPKLLGLSWWLLPPATFAVFMSPTT-GGFQTGWWGYPPLAQN---SGS 235

Query: 416 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 595
            +   +       ++S                   S  ++P+FV  +   A         
Sbjct: 236 GIVWYVLGAATILVASLLGAINIAGTMVYMRAKGMSLGRVPIFVWGLFAAATTLVVESPA 295

Query: 596 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 751
                 + L+D    + F+     G P+ Y   F F  HPEVY+ ILP   I
Sbjct: 296 TYTGALMDLSDMIAGSHFYT-GPTGHPLAYLDQFWFLFHPEVYVFILPAFAI 346


>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
           Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
           subunit I - Eutetramorium sp. BLF m1
          Length = 201

 Score = 40.3 bits (90), Expect = 0.050
 Identities = 27/78 (34%), Positives = 35/78 (44%)
 Frame = +2

Query: 410 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 589
           G    L IFSL +   S                    + D++ L   ++ ITA       
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183

Query: 590 XXXAGAITILLTDRNLNT 643
              AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201


>UniRef50_Q9B6E2 Cluster: Cytochrome c oxidase subunit I; n=2;
           Yarrowia lipolytica|Rep: Cytochrome c oxidase subunit I
           - Yarrowia lipolytica (Candida lipolytica)
          Length = 399

 Score = 39.5 bits (88), Expect = 0.087
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHA 178
           ++STN KDI  LY                    EL N GS  L G+ Q +N ++TAHA
Sbjct: 11  LFSTNAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHA 68


>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
           Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
           buchholtzi (Butterflyfish)
          Length = 184

 Score = 39.5 bits (88), Expect = 0.087
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +2

Query: 701 FFGHPEVYILILPGXGII 754
           FFGHPEVYILILPG G+I
Sbjct: 2   FFGHPEVYILILPGFGMI 19


>UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=2;
           Saccharomycetaceae|Rep: Putative COX1/OXI3 intron 2
           protein - Saccharomyces cerevisiae (Baker's yeast)
          Length = 854

 Score = 39.1 bits (87), Expect = 0.12
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHA 178
           +YSTN KDI  LY                    EL  PGS  L G+ Q++N +V  HA
Sbjct: 6   LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHA 63


>UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia
           polymorpha|Rep: CoxI intron2 ORF - Marchantia polymorpha
           (Liverwort)
          Length = 802

 Score = 38.7 bits (86), Expect = 0.15
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYN 157
           ++STNHKDIGTLY                    EL  PG+ I  G+ Q+YN
Sbjct: 9   LFSTNHKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59


>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
           Digenea|Rep: Cytochrome c oxidase subunit I -
           Echinostoma hortense
          Length = 154

 Score = 36.3 bits (80), Expect = 0.81
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +2

Query: 701 FFGHPEVYILILPGXGII 754
           FFGHPEVY+LILP  GI+
Sbjct: 1   FFGHPEVYVLILPVFGIV 18


>UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|Rep:
           Maturase-like protein - Pellia epiphylla
          Length = 843

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYN 157
           ++STNHKDIGT Y                    EL  PG+ I  G+ Q+YN
Sbjct: 9   LFSTNHKDIGTPYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59


>UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;
           n=21; Neocoleoidea|Rep: NADH-ubiquinone oxidoreductase
           chain 2 - Sepia officinalis (Common cuttlefish)
          Length = 375

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +1

Query: 7   MNLFYKS*RYWNIIFYFWYLIRNNWNIFKTFNS 105
           M +  KS  YWNI+F+FWYLI    ++ K  NS
Sbjct: 339 MIILNKSQSYWNIMFHFWYLISFISHLAKINNS 371


>UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3
           precursor (DNA endonuclease I- SceIII) [Contains:
           Truncated non-functional cytochrome oxidase 1; DNA
           endonuclease aI3 (EC 3.1.-.-) (Intron-encoded
           endonuclease I-SceIII)]; n=5; Saccharomycetales|Rep:
           Intron-encoded DNA endonuclease aI3 precursor (DNA
           endonuclease I- SceIII) [Contains: Truncated
           non-functional cytochrome oxidase 1; DNA endonuclease
           aI3 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceIII)]
           - Saccharomyces cerevisiae (Baker's yeast)
          Length = 403

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +2

Query: 11  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIV 166
           +YSTN KDI  LY                    EL  PGS  L G+ Q++N +V
Sbjct: 6   LYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLV 59


>UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7;
           Locustacarus buchneri|Rep: Cytochrome oxidase subunit 1
           - Locustacarus buchneri
          Length = 185

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 23/62 (37%), Positives = 30/62 (48%)
 Frame = +1

Query: 559 DYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFT 738
           +Y+      TT  S S +N  N SKL++I+  S     PN I   ILI  T   L+ N T
Sbjct: 94  NYNNTTDYFTTSSSRSNHNTTNSSKLQHILLRSFGGSGPNPIPASILILRTPSGLHSNST 153

Query: 739 RI 744
            I
Sbjct: 154 SI 155


>UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4;
           Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I -
           Roseiflexus sp. RS-1
          Length = 561

 Score = 32.7 bits (71), Expect = 10.0
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 665 GGDPILYQHLF*FFGHPEVYILILP 739
           G DP+L + LF F GHP VY  +LP
Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLP 248


>UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 1420

 Score = 32.7 bits (71), Expect = 10.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 630  RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 508
            +++NN +I      S NNN N++  T  TN  + +N+I +N
Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078


>UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3;
           n=1; Candida albicans|Rep: Putative uncharacterized
           protein CLN3 - Candida albicans (Yeast)
          Length = 785

 Score = 32.7 bits (71), Expect = 10.0
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 684 YKIGSPPPAGSKNDVFKFRSVNN---IVIAPAKTGSDNNNKNAVIPTAH 547
           Y++ +PP + +KN   K  S NN     IA   T ++NNN N+ +P  H
Sbjct: 572 YQMVTPPNSANKNSN-KSNSANNNNTTTIATTTTTTNNNNNNSQLPAPH 619


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,511,335
Number of Sequences: 1657284
Number of extensions: 9892568
Number of successful extensions: 22107
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 20278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21817
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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