Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_N02
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    28   1.1  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    28   1.1  
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ...    28   1.4  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   1.9  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    27   2.5  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    26   4.3  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   4.3  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    26   5.7  
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    26   5.7  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    25   7.6  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   7.6  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   7.6  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   7.6  

>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +3

Query: 90  CL*TSLIAAQCPLLHQRNHPAGVKQGKETSGLLMSVIRTLSASETNEQREKERAKLEKEY 269
           C   +L  A C   ++      V++ KET G +   ++ +   E  E+  + R KL +E 
Sbjct: 24  CQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQRRLKLLEE- 82

Query: 270 KKSDARLD 293
            K D  LD
Sbjct: 83  -KIDLLLD 89


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 120 CPLLHQRNHPAGVKQGKETSGLLMSVIRTLSASETNEQREKERAKLEKE--YKKSDARLD 293
           C L ++ N    +  G   +G    + +  +  E   Q+E ER K EKE   ++ + +L 
Sbjct: 55  CKLSYEGNRKKRIYNGSAEAGKEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLR 114

Query: 294 ELVAVHAQEITDV 332
           E   + A+++ ++
Sbjct: 115 EQEKIAAKKMKEL 127


>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 268

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +3

Query: 141 NHPAGVKQGKETSGLLMSVIRTLSASETNEQREKERAKLEKEYKKSDARLDELVAVHAQE 320
           +HP   +Q K    L     RTL  S     +E   AK  K  KK D    E + +H +E
Sbjct: 185 DHPESKRQKKYYLVLQAGGTRTLDISSMTLDQEGTNAKQRKLKKKQDMSTREYI-IHKKE 243

Query: 321 I 323
           +
Sbjct: 244 L 244


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 138 RNHPAGVKQGKETSGLLMSVIRTLSASETNEQREKER 248
           +NH   + QG+ T+ L+ + I  L  S  NE+  +++
Sbjct: 835 QNHQQSLVQGESTTSLIKTEIAELELSLVNEEHNRKK 871


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 168 KETSGLLMSVIRTLSASETNEQREKERAKLEKEYKKSD 281
           +ETSG ++   +T S SE+ E+     A    EY+K+D
Sbjct: 44  EETSGGILKKAKTQSFSESLERFRFAHAGSNNEYRKTD 81


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 210 SASETNEQREKERAKLEKEYKKS 278
           S SETN + E++  ++EK +K+S
Sbjct: 110 SESETNSESEEDNFQIEKAFKQS 132


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 192 SVIRTLSASETNEQREKERAKLEKEYKKSDARLDELVAVHAQEITDVMQK 341
           S +  + AS   ++ E  R +LEK+ +  DAR       H Q + + MQK
Sbjct: 327 SELENVIASRLAQREEILRRELEKQLRDMDARYQR----HMQTVVNSMQK 372


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 147 PAGVKQGKETSGLLMSVIRTLSASETNEQREKERAKLEKEYKK 275
           P  V  G++   L    ++ L      EQ+ KER   E E KK
Sbjct: 20  PKEVILGEDGKPLSKKALKKLEKEREKEQKRKEREAREAEEKK 62


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 291 PALHRSSCTLSQV*RVPFHVVHWSHSL 211
           P +    CTL+   R+P H V W++ L
Sbjct: 198 PKISYPICTLANTPRLPEHCVEWAYLL 224


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 630 DALNTTRQHLQAKKR 674
           DALNT ++HL  KKR
Sbjct: 117 DALNTKQEHLDIKKR 131


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 213 ASETNEQR-EKERAKLEKEYKKSDARLDELVA 305
           A +  E+R +KERAK  K+  +  A  D+ +A
Sbjct: 742 ARKAEEKRLQKERAKYAKQMSRESAHADQAIA 773


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +3

Query: 156 VKQGKETSGL-LMSVIRT-LSASETNEQREKERAKLEKEYKKSDARLDELVAVHAQEI 323
           V Q KE  G  L+++ +  L   ET+E++   R KLEKEY++   +L  ++    +++
Sbjct: 505 VTQLKEFEGKKLVNITKDGLELEETDEEKAA-REKLEKEYEEFAKQLKTILGDKVEKV 561


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 111 AAQCPLLHQRNHPAGVKQGKETSGLLMSVIRTLSASETNEQREKERAKLEKEYKKSD-AR 287
           A+Q P +   N PAGVK  + T              E N ++ K R +L   +  ++ A+
Sbjct: 155 ASQSPSVEGENEPAGVKSNEATKP------SVTEEKEKNAEQNKRRERLSISHIVTELAK 208

Query: 288 LDEL 299
            DE+
Sbjct: 209 KDEV 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,723
Number of Sequences: 5004
Number of extensions: 46990
Number of successful extensions: 148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)