Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_N02
         (674 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY905551-1|AAW83821.1|  985|Drosophila melanogaster Sec8 protein...    75   9e-14
AY119660-1|AAM50314.1|  985|Drosophila melanogaster SD04949p pro...    75   9e-14
AE014297-343|AAF51959.3|  985|Drosophila melanogaster CG2095-PA ...    75   9e-14
AF186472-1|AAF01416.1| 1409|Drosophila melanogaster condensin su...    29   5.8  
AF185287-1|AAF13306.1| 1409|Drosophila melanogaster XCAP-C/SMC4 ...    29   5.8  
AF160943-1|AAD46883.2| 1012|Drosophila melanogaster LD20207p pro...    29   5.8  
AE014134-2761|AAF53560.1| 1409|Drosophila melanogaster CG11397-P...    29   5.8  

>AY905551-1|AAW83821.1|  985|Drosophila melanogaster Sec8 protein
           protein.
          Length = 985

 Score = 74.9 bits (176), Expect = 9e-14
 Identities = 36/77 (46%), Positives = 56/77 (72%), Gaps = 3/77 (3%)
 Frame = +3

Query: 147 PAGVKQGKETS---GLLMSVIRTLSASETNEQREKERAKLEKEYKKSDARLDELVAVHAQ 317
           P GVK GK+ S   G L++VI++L  SET E+R+KE+ K+E E+K+SD RL+ELV+ H Q
Sbjct: 10  PRGVKYGKDESAGCGFLVNVIKSLGFSETTEERQKEKQKIEAEFKRSDLRLNELVSRHDQ 69

Query: 318 EITDVMQKFTAVGTALS 368
           ++T V+  F+ V + ++
Sbjct: 70  QLTQVLPLFSQVSSEVT 86


>AY119660-1|AAM50314.1|  985|Drosophila melanogaster SD04949p
           protein.
          Length = 985

 Score = 74.9 bits (176), Expect = 9e-14
 Identities = 36/77 (46%), Positives = 56/77 (72%), Gaps = 3/77 (3%)
 Frame = +3

Query: 147 PAGVKQGKETS---GLLMSVIRTLSASETNEQREKERAKLEKEYKKSDARLDELVAVHAQ 317
           P GVK GK+ S   G L++VI++L  SET E+R+KE+ K+E E+K+SD RL+ELV+ H Q
Sbjct: 10  PRGVKYGKDESAGCGFLVNVIKSLGFSETTEERQKEKQKIEAEFKRSDLRLNELVSRHDQ 69

Query: 318 EITDVMQKFTAVGTALS 368
           ++T V+  F+ V + ++
Sbjct: 70  QLTQVLPLFSQVSSEVT 86


>AE014297-343|AAF51959.3|  985|Drosophila melanogaster CG2095-PA
           protein.
          Length = 985

 Score = 74.9 bits (176), Expect = 9e-14
 Identities = 36/77 (46%), Positives = 56/77 (72%), Gaps = 3/77 (3%)
 Frame = +3

Query: 147 PAGVKQGKETS---GLLMSVIRTLSASETNEQREKERAKLEKEYKKSDARLDELVAVHAQ 317
           P GVK GK+ S   G L++VI++L  SET E+R+KE+ K+E E+K+SD RL+ELV+ H Q
Sbjct: 10  PRGVKYGKDESAGCGFLVNVIKSLGFSETTEERQKEKQKIEAEFKRSDLRLNELVSRHDQ 69

Query: 318 EITDVMQKFTAVGTALS 368
           ++T V+  F+ V + ++
Sbjct: 70  QLTQVLPLFSQVSSEVT 86


>AF186472-1|AAF01416.1| 1409|Drosophila melanogaster condensin
           subunit SMC4 protein.
          Length = 1409

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/44 (34%), Positives = 29/44 (65%)
 Frame = +3

Query: 222 TNEQREKERAKLEKEYKKSDARLDELVAVHAQEITDVMQKFTAV 353
           TN+QR+K++A++EK  K+ +  L +L   + +EI D  +K  ++
Sbjct: 412 TNKQRKKDKAQIEKNEKELE-DLHKLPEKNQREIEDCNKKLESL 454


>AF185287-1|AAF13306.1| 1409|Drosophila melanogaster XCAP-C/SMC4
           homolog Gluon protein.
          Length = 1409

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/44 (34%), Positives = 29/44 (65%)
 Frame = +3

Query: 222 TNEQREKERAKLEKEYKKSDARLDELVAVHAQEITDVMQKFTAV 353
           TN+QR+K++A++EK  K+ +  L +L   + +EI D  +K  ++
Sbjct: 412 TNKQRKKDKAQIEKNEKELE-DLHKLPEKNQREIEDCNKKLESL 454


>AF160943-1|AAD46883.2| 1012|Drosophila melanogaster LD20207p
           protein.
          Length = 1012

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/44 (34%), Positives = 29/44 (65%)
 Frame = +3

Query: 222 TNEQREKERAKLEKEYKKSDARLDELVAVHAQEITDVMQKFTAV 353
           TN+QR+K++A++EK  K+ +  L +L   + +EI D  +K  ++
Sbjct: 412 TNKQRKKDKAQIEKNEKELE-DLHKLPEKNQREIEDCNKKLESL 454


>AE014134-2761|AAF53560.1| 1409|Drosophila melanogaster CG11397-PA
           protein.
          Length = 1409

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/44 (34%), Positives = 29/44 (65%)
 Frame = +3

Query: 222 TNEQREKERAKLEKEYKKSDARLDELVAVHAQEITDVMQKFTAV 353
           TN+QR+K++A++EK  K+ +  L +L   + +EI D  +K  ++
Sbjct: 412 TNKQRKKDKAQIEKNEKELE-DLHKLPEKNQREIEDCNKKLESL 454


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,253,506
Number of Sequences: 53049
Number of extensions: 553987
Number of successful extensions: 1726
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1716
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)