Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_N02
(674 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58590.1 68418.m07342 Ran-binding protein 1, putative / RanBP... 33 0.23
At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil... 31 0.53
At2g39320.1 68415.m04827 OTU-like cysteine protease family prote... 30 1.2
At3g28190.1 68416.m03522 hypothetical protein 29 2.1
At3g60940.1 68416.m06818 expressed protein contains Pfam profile... 29 3.8
At2g25970.1 68415.m03117 KH domain-containing protein 29 3.8
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 29 3.8
At1g02065.2 68414.m00127 squamosa promoter-binding protein-like ... 29 3.8
At1g02065.1 68414.m00128 squamosa promoter-binding protein-like ... 29 3.8
At3g46780.1 68416.m05078 expressed protein 28 6.6
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei... 28 6.6
At2g33793.1 68415.m04145 expressed protein 28 6.6
>At5g58590.1 68418.m07342 Ran-binding protein 1, putative / RanBP1,
putative strong similarity to Ran binding proteins from
Arabidopsis thaliana atranbp1a [Arabidopsis thaliana]
GI:2058282, atranbp1b [Arabidopsis thaliana] GI:2058284;
contains Pfam profile PF00638: RanBP1 domain
Length = 219
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 162 QGKETSGLL--MSVIRTLSASETNEQREKERAKLEKEYKK 275
QG E +GL+ +SV +S + E EKE AK +KE KK
Sbjct: 167 QGDEAAGLIENLSVEENISEEKAKEAEEKEPAKEDKETKK 206
>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 499
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 201 RTLSASETNEQREKERAKLEKEYKKSDARLDELVAVHAQEIT 326
+T+ ASE ++R+ E + EKE +KS + + AV +E+T
Sbjct: 439 KTVDASEKKKKRKTEEKEEEKEEEKSKKKKKKSKAVEGEELT 480
>At2g39320.1 68415.m04827 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 189
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 129 LHQRNHPAGVKQGKETSGLLMSVIRTLSASETN--EQREKERAKLEKEYKKSD 281
++++N G + +S + ++ +E E+ EKER +EKE KK D
Sbjct: 100 IYKKNKEKGSRSSSSSSSAVWMKLQRKKENEAKKKEEEEKERKDMEKEEKKKD 152
>At3g28190.1 68416.m03522 hypothetical protein
Length = 112
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = +3
Query: 168 KETSGLLMSVIRTLSASETNEQREKERAKLEKEYKKSDARLDELVAVHAQEITDV 332
KET + M S ++ + RE E+ K+E +Y++ + +LD LV + +I+++
Sbjct: 42 KETVKVQMESFTEPSKAQMAKYREMEQ-KMEAKYREMENKLDNLVKLSMTQISEL 95
>At3g60940.1 68416.m06818 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 257
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 465 PPTIFLGHHVLIVANLCMHPDEPLLPHNAVPILIRLYPQL 346
PP +F H++ ++A P++ + P P+ + YPQL
Sbjct: 36 PPAVFGTHYLRLLATDSSPPNDTIGPQYGDPVRLPGYPQL 75
>At2g25970.1 68415.m03117 KH domain-containing protein
Length = 632
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 107 NSGTMSSPPPTKPPRWG*ARKRNEWPANVGDQN 205
NSG + PP +KPP +G +++ P + G Q+
Sbjct: 525 NSGYGAPPPASKPPTYGQSQQSPGAPGSYGSQS 557
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 135 QRNHPAGVKQGKETSGLLMSVIRTLSASETNEQR---EKERAKLEKEYKKSDARLDELVA 305
QR H A + +E S + R + + Q+ EKERA+LE+E + A +
Sbjct: 170 QRRHNAELVSMQEASSIRKEKARIATEEQIQAQQRETEKERAELERETIRVKAMAEAEGR 229
Query: 306 VHAQEITD 329
H ++T+
Sbjct: 230 AHEAKLTE 237
>At1g02065.2 68414.m00127 squamosa promoter-binding protein-like 8
(SPL8) identical to squamosa promoter binding
protein-like 8 [Arabidopsis thaliana] GI:5931679;
contains Pfam profile PF03110: SBP domain
Length = 246
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 73 SKSNNFVYKHH**RHNVLSSTNETTPLGLS 162
+ SNN HH H++ ST TTP G S
Sbjct: 71 TNSNNQFLHHHHHHHSLYGSTTTTTPYGAS 100
>At1g02065.1 68414.m00128 squamosa promoter-binding protein-like 8
(SPL8) identical to squamosa promoter binding
protein-like 8 [Arabidopsis thaliana] GI:5931679;
contains Pfam profile PF03110: SBP domain
Length = 333
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 73 SKSNNFVYKHH**RHNVLSSTNETTPLGLS 162
+ SNN HH H++ ST TTP G S
Sbjct: 71 TNSNNQFLHHHHHHHSLYGSTTTTTPYGAS 100
>At3g46780.1 68416.m05078 expressed protein
Length = 510
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 234 REKERAKLEKEYKKSDARLDELVAVHAQEITDVMQKFTAVGTAL 365
+ +E A+ KE++K +L E A A D QK AVG +
Sbjct: 368 KAREAAEAAKEFEKQMQKLSEKEAEAASLAEDAQQKADAVGVTV 411
>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
similar to SP|Q05022 rRNA biogenesis protein RRP5
{Saccharomyces cerevisiae}; contains Pfam profile
PF00575: S1 RNA binding domain
Length = 1838
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 219 ETNEQREKERAKLEKEYKKSDARLDELVAVHAQEITDVMQK 341
E +++REK++ K E+E KK A L+ HA E D +K
Sbjct: 1541 EKSKRREKQKDKEERE-KKIQAAEGRLLEHHAPENADEFEK 1580
>At2g33793.1 68415.m04145 expressed protein
Length = 212
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/70 (21%), Positives = 33/70 (47%)
Frame = +3
Query: 135 QRNHPAGVKQGKETSGLLMSVIRTLSASETNEQREKERAKLEKEYKKSDARLDELVAVHA 314
++ H G K+ +E+ + + +++ E + EKER K KS + ++ A
Sbjct: 52 EKAHEDGRKKKEESISSVSTEVKS-KIDELKSKLEKERQNFSKALSKSSKECENILKDEA 110
Query: 315 QEITDVMQKF 344
+ ++ +KF
Sbjct: 111 AKFEELHKKF 120
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,230,377
Number of Sequences: 28952
Number of extensions: 248415
Number of successful extensions: 850
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -