Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M24
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1037 - 27058002-27058082,27058856-27059041,27060033-270601...    27   8.2  
03_02_0150 + 5941560-5941739,5942027-5942118,5942232-5942298,594...    27   8.2  

>06_03_1037 -
           27058002-27058082,27058856-27059041,27060033-27060176,
           27060284-27061183
          Length = 436

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 310 KGGRGRQSKRRESWRIRNRKDGRRG 236
           +GGRGR ++ RE  R R R DG RG
Sbjct: 213 RGGRGRGARGRERGRGRGR-DGGRG 236


>03_02_0150 +
           5941560-5941739,5942027-5942118,5942232-5942298,
           5942401-5942523,5942692-5942784,5943149-5943278,
           5943483-5943564,5943682-5943814,5944246-5944451,
           5944538-5944663,5945024-5945333,5945518-5945643,
           5946151-5946456
          Length = 657

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 185 TTLCTPPAYTVGW 147
           +T+C PPA TVGW
Sbjct: 225 STMCGPPARTVGW 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,126,482
Number of Sequences: 37544
Number of extensions: 162890
Number of successful extensions: 503
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)