Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M24
         (491 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11650.1 68417.m01862 osmotin-like protein (OSM34) nearly ide...    29   1.3  
At5g19060.1 68418.m02266 expressed protein ; expression supporte...    27   9.1  
At4g14465.1 68417.m02231 DNA-binding protein-related contains Pf...    27   9.1  
At2g24120.2 68415.m02882 DNA-directed RNA polymerase, chloroplas...    27   9.1  
At2g24120.1 68415.m02881 DNA-directed RNA polymerase, chloroplas...    27   9.1  

>At4g11650.1 68417.m01862 osmotin-like protein (OSM34) nearly
           identical to SP|P50700|OSL3_ARATH Osmotin-like protein
           OSM34 precursor {Arabidopsis thaliana}; contains Pfam
           profile PF00314: Thaumatin family
          Length = 244

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -2

Query: 304 GRGRQSKRRESWRIRNRKDGRRG*QLPWGRRMCDHTKKE*PRCALRQRIR*GGMRCRQWE 125
           G GR+    +SWR+ +   G +  ++ WGR  C+       RC        GG++C  W 
Sbjct: 42  GGGRRLDAGQSWRL-DVAAGTKMARI-WGRTNCNFDSSGRGRCQTGDCS--GGLQCTGWG 97

Query: 124 QP 119
           QP
Sbjct: 98  QP 99


>At5g19060.1 68418.m02266 expressed protein ; expression supported
           by MPSS
          Length = 551

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 147 PPYRIRWRSAQRGHSFFV 200
           PP ++RW   + GH +FV
Sbjct: 519 PPAKVRWIDGEIGHQYFV 536


>At4g14465.1 68417.m02231 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 281

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 144 IPPYRIRWRSAQRGHSFFVWSHIRRPH 224
           +PP+ I   + Q GH  + W H R P+
Sbjct: 255 MPPHLIPNGAGQLGHEPYTWVHARPPY 281


>At2g24120.2 68415.m02882 DNA-directed RNA polymerase, chloroplast
           (RPOPT) identical to SP|O24600 DNA-directed RNA
           polymerase, chloroplast precursor (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 1035

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 144 IPPYRIRWRSAQRGHSFFVWSHIRRPHGS 230
           +PP R  W+   +G   F+ S+I R HGS
Sbjct: 426 VPPKR--WKGYDKGGYLFLPSYIMRTHGS 452


>At2g24120.1 68415.m02881 DNA-directed RNA polymerase, chloroplast
           (RPOPT) identical to SP|O24600 DNA-directed RNA
           polymerase, chloroplast precursor (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 993

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 144 IPPYRIRWRSAQRGHSFFVWSHIRRPHGS 230
           +PP R  W+   +G   F+ S+I R HGS
Sbjct: 426 VPPKR--WKGYDKGGYLFLPSYIMRTHGS 452


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,865,981
Number of Sequences: 28952
Number of extensions: 110793
Number of successful extensions: 253
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)