Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M22
(429 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0) 130 6e-31
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026) 62 1e-10
SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2) 25 2.7
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066) 27 5.0
SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 27 5.0
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002) 27 5.0
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 27 6.6
SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15) 27 6.6
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 27 8.7
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12) 27 8.7
SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) 27 8.7
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6) 27 8.7
>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
Length = 113
Score = 130 bits (313), Expect = 6e-31
Identities = 62/108 (57%), Positives = 72/108 (66%), Gaps = 2/108 (1%)
Frame = +3
Query: 51 SKMVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIF 224
S +VNVPKQR+T+ +QYK K AQG+RRYDRKQ G+GGQ+KP+F
Sbjct: 6 SPVVNVPKQRKTFCKGKKCRRHTLHKVTQYKTGKASLFAQGKRRYDRKQSGFGGQTKPVF 65
Query: 225 XXXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 368
IVLR+EC CK R Q+ LKRCKHFELGGDKKRKGQMIQF
Sbjct: 66 HKKAKTTKKIVLRMECTQCKYRKQMPLKRCKHFELGGDKKRKGQMIQF 113
>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
Length = 39
Score = 62.5 bits (145), Expect = 1e-10
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +3
Query: 252 IVLRLECADCKVRSQVALKRCKHFELGGDKKRK 350
IVLR+EC CK R Q+ LKRCKHFELGGDKKRK
Sbjct: 7 IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39
>SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2)
Length = 474
Score = 24.6 bits (51), Expect(2) = 2.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 288 RSQVALKRCKHFELGGD 338
+S++A RC H LGGD
Sbjct: 419 QSRIAFPRCAHGPLGGD 435
Score = 22.2 bits (45), Expect(2) = 2.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 141 SKERHAAQGRRRYDRKQQGYGGQSKPIF 224
++ RH + RRRY + G QS+ F
Sbjct: 397 AERRHNGRDRRRYGQPDSGDVRQSRIAF 424
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 264 LECADCKVRSQVALKRCKHFELG 332
+EC +CK R +A C HF+ G
Sbjct: 1113 IECPNCKFRYDLAKGGCMHFKCG 1135
>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +1
Query: 40 AERTQKW*TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNP 219
AE +W T + + +K + + K R T P + D+ +R+T VSP
Sbjct: 1021 AESFHRWLTQRQFCAQYSKELASGKTNREWVTALPIV-----ISDINATKTRMTGVSPKD 1075
Query: 220 SSKRRQKPLR 249
+ K R+ PL+
Sbjct: 1076 AIKLRRVPLK 1085
>SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066)
Length = 716
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 198 NPAVYDHNVFYPGQRAFPWTF-CTVIPCVLCGIYIFCSTSCA 76
+P + DH VFYP P TF T+ P + I ++ ST+ A
Sbjct: 167 HPILNDHGVFYPKALPHPLTFEITLAP--VSDIVVYSSTTPA 206
>SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1359
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 198 NPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCA 76
+P + DH VFYP P TF + + I ++ ST+ A
Sbjct: 1172 HPILNDHGVFYPKALPHPLTF-EITLATVSDIVVYSSTTPA 1211
>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
Length = 1725
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 198 NPAVYDHNVFYPGQRAFPWTF-CTVIPCVLCGIYIFCSTSCA 76
+P + DH VFYP P TF T+ P + I ++ ST+ A
Sbjct: 1243 HPILNDHGVFYPKALPHPLTFEITLAP--VSDIVVYSSTTQA 1282
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 381 LEAFKIGSSVPFSSCHHQAQSACI 310
+E + +G S+ + C H SACI
Sbjct: 261 MEEYAVGDSMKYLPCRHNFHSACI 284
>SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)
Length = 1575
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 124 YHSTKSPRK-GTLPRVEDV--MIVNSRVTVVSPNPSSKRRQK 240
Y + P+K G RV+++ ++ R T+ PN S RRQ+
Sbjct: 1011 YEAAWDPKKSGNTERVQELQGVVTTDRQTIDDPNTSESRRQE 1052
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +1
Query: 112 KYTRYHS-TKSPRKGTLPRVEDVMI--VNSRVTVVSPNPSSKRRQ 237
K TRY S T S R P ++ + +NS SP+PS+KR +
Sbjct: 2061 KSTRYSSRTSSNRDSRTPPADEKIRADINSNEVQSSPSPSTKREE 2105
>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = -3
Query: 163 WAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 68
W L F+ C TLC W + Y R G
Sbjct: 283 WIGAWWLGFVICGTLCIFWSIWLFGYPKRIPG 314
>SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)
Length = 501
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 138 KSKERHAAQGRRRYDRKQQGY 200
K K+RHA Q YD+K Q Y
Sbjct: 471 KQKDRHARQLGINYDKKHQNY 491
>SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 288 RSQVALKRCKHFELGGDKKR 347
+S++A RC H LGGD +R
Sbjct: 495 QSRIASPRCAHRPLGGDSRR 514
>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
Length = 321
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 361 IICPFLFLSPPSSKCLHLFNATCDLTLQSAHSR 263
I+C F +P +KCLH F C L +S+
Sbjct: 246 IMCRKTFKNPVVTKCLHYFCEACALQHYKKNSK 278
>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
Length = 399
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -1
Query: 174 VFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCAVLV 67
VFYP P V+ C+ + + C C +LV
Sbjct: 105 VFYPPSNGLPVFTLLVMDCLCFTLLVMCYLCCTLLV 140
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,227,682
Number of Sequences: 59808
Number of extensions: 255265
Number of successful extensions: 1037
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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