Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M21
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0625 - 26225201-26225879,26226706-26227553                       33   0.15 
10_01_0274 - 2901033-2901778,2902475-2902634                           32   0.47 
03_05_0456 - 24498212-24499581,24502660-24503071                       31   1.1  
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982           31   1.1  
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257...    29   2.5  
05_07_0206 - 28405109-28406671                                         29   4.4  
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067     28   5.8  
02_05_0989 - 33343233-33344417                                         28   5.8  
06_01_0145 + 1092764-1093351                                           28   7.7  

>03_05_0625 - 26225201-26225879,26226706-26227553
          Length = 508

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
 Frame = +1

Query: 199 PDTERP--YAVNQYGLYNRNDIPPQSRPEPELGQN-----FAVYDPDTRQR----TSTAI 345
           PDT RP    VN    +    +PP+ RP P +G +     F  YDP    R    + T  
Sbjct: 126 PDTHRPAIVVVNPATRWCSPPLPPR-RP-PRMGASTFPADFLAYDPAASSRYEVLSVTCF 183

Query: 346 NRNCTAPGCCVP 381
            R C+A  CC+P
Sbjct: 184 RRRCSACSCCLP 195


>10_01_0274 - 2901033-2901778,2902475-2902634
          Length = 301

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 28/97 (28%), Positives = 33/97 (34%)
 Frame = +1

Query: 169 PPTNWPREVAPDTERPYAVNQYGLYNRNDIPPQSRPEPELGQNFAVYDPDTRQRTSTAIN 348
           PP+  P    P  E P A   YG     + PP   P PE GQ    Y P T    + A  
Sbjct: 191 PPSTPPGYGQPAPECPPADPGYG-QPAPECPPPPTPAPECGQPAPEYPPSTPAYGTPAPE 249

Query: 349 RNCTAPGCCVPKCFAEKGNRGFPGSPGPQGPRGLPGH 459
              + P    P            GSP P  P   P +
Sbjct: 250 CPPSTPEYGTPATACPPPTAPGYGSPSPFWPPVSPAY 286


>03_05_0456 - 24498212-24499581,24502660-24503071
          Length = 593

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 274 VLIGVVYRFYYTTHIDLQRMVAPYLAPLHEAS*SAANSLEYMLFQSAYLS 125
           +L+  V +  Y THI    M+ P+LA +H  + +  N+   ML  +A ++
Sbjct: 365 LLVSAVGQARYLTHIARTHMMPPWLARVHPGTGTPVNATVAMLLATAVIA 414


>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
          Length = 301

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
 Frame = +1

Query: 301 AVYDPDTRQRTSTAINRNCTAP---GCCVPKCFAEKGNRGFPGSPGPQGPRGLPGHEG 465
           A + P    RT T + +  T     G   P C      R FPG  G   P  +PGH G
Sbjct: 24  AAFVPVAESRT-TPVEKTTTTQAEDGVKKPDCVPAFDPRSFPGHGGTTTPTPIPGHHG 80


>08_02_1277 +
           25823835-25825113,25825201-25825418,25825501-25825724,
           25826468-25827080,25827735-25827775,25830549-25831191,
           25832595-25834012,25834110-25834251,25834415-25834522,
           25835346-25835558,25835643-25835753,25836099-25836293,
           25836555-25836695,25836835-25836909
          Length = 1806

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 169 PPTNWPREVAPDTERPYAVNQYGLYNRNDIPPQSRPEPELGQNFAVYD 312
           PP + P    P  + P   + Y  Y+R   P  S  EP     +A YD
Sbjct: 152 PPYDRPNYPPPSPQEPVRNSYYMSYDRPSYPAASPQEPTRTSYYASYD 199


>05_07_0206 - 28405109-28406671
          Length = 520

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 268 SRPEPELGQNFAVYDPDTRQRTSTAINRNCT 360
           +RP P    +FA Y PD  ++ S A   NCT
Sbjct: 103 TRPRPVYLVDFACYKPDDERKCSRARFMNCT 133


>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
          Length = 1064

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 16  GARARDSGAARLVPWWSTYC 75
           GA A  +G + L+PWWS  C
Sbjct: 604 GAGAYGNGPSSLLPWWSASC 623


>02_05_0989 - 33343233-33344417
          Length = 394

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 316 PDHTQRSFALILVPVLI-GVVYRFYYTTHIDLQRMVAPYLAP 194
           P  +  S AL+L+P+L+ G +Y F Y    +LQ ++     P
Sbjct: 78  PKLSASSKALVLLPLLLLGFIYLFVYPKEFELQALMMSSCGP 119


>06_01_0145 + 1092764-1093351
          Length = 195

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 583 IQGSPGDQGRPGIPGRDGCNGTDG 654
           +   PG+ G+PG PG+ G  G  G
Sbjct: 11  VDDQPGEPGQPGEPGQPGGRGRGG 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,256,127
Number of Sequences: 37544
Number of extensions: 396638
Number of successful extensions: 1120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)