Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M18
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos... 28 1.4
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 28 1.8
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.4
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc... 27 2.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.2
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 27 4.2
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 26 5.6
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2... 26 7.4
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 7.4
>SPAC664.07c |rad9||checkpoint clamp complex protein
Rad9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 414 IDRNLSMTDSAHTPPGSPEDLPD-DESLHSYGSAATAASVDAGYAPFNGTTFSGRSM 581
++RN S+T AH PPGS D +S + SA + G + T +G+S+
Sbjct: 329 VERNNSLTAVAHNPPGSIGWQTDQSDSSRMFNSALDRSDETNGIKEPSTTNDAGQSL 385
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 654 QKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVXELR 761
+ Q+ L S S+ + +L KK++E+ KE+ E R
Sbjct: 1045 ESQLASLVSKYSETESELNKKEAELVIFQKEITEYR 1080
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.5 bits (58), Expect = 2.4
Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Frame = +3
Query: 171 ANVSGNFRRSSSLRLRGE--KMVQRSPLCTRKLIPIITENTPQKQRSDGSRLQEPGHRQR 344
A+V+ + ++ ++ R + + K ++S + P+ Q+++ + + LQEPG Q
Sbjct: 43 ASVTKDNKKKAAKRAKKKAAKKKKQSAAASASSTPVEEAQHAQEEQQEQTILQEPGFTQT 102
Query: 345 SHSFNSNAQQKP----KKSCLKTQDACIDRNLSMTDSAHTPPGSPEDLPDDESLHSYGSA 512
+++ +P S L T + D S + S P + E +S S+
Sbjct: 103 IVEKDADQVDEPLEPIASSALGTVEPPTDNKPSASTSTAVPTTEARNTSITEPANSPSSS 162
Query: 513 ATAAS 527
+++AS
Sbjct: 163 SSSAS 167
>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 132 YCSXYSFASIXHISTFHCNNRNSCFEF*NDST 37
YC +S +I + C N N F F ND T
Sbjct: 83 YCCDFSPRAIDFVKKHSCYNENRVFPFVNDIT 114
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 459 GSP-EDLPDDESLHSYGSAATAASVDAG 539
GSP LP D +LH +A+ AA V+ G
Sbjct: 453 GSPMPKLPSDSALHRLNAASDAAGVNGG 480
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 447 HTPPGSPEDLPDDESLHSYGSAATAASV 530
H+P PED P SL S S+ A++V
Sbjct: 416 HSPSNHPEDFPPSFSLGSNPSSGAASAV 443
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 230 GTAFTTLHKEVDSNNHGKHATKTTQRWFSTPRAGSSPAESFI*FK--CSAKAQKVLFKNT 403
G F L+++ + N G+ + + W++ ++ F+ +K C+ K+ +
Sbjct: 364 GDEFVALYEKYEKENRGRRSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKSNQKNVGTI 423
Query: 404 RC 409
RC
Sbjct: 424 RC 425
>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 450 TPPGSPEDLPDDESLHSYGSAATAASV 530
TPP P+ +PDD S ATA ++
Sbjct: 328 TPPHPPKIMPDDISASLANKGATAVTI 354
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 279 ENTPQKQRSDGSRLQEPGHRQR 344
++T + + +D RL EPG+R+R
Sbjct: 573 DSTEENENTDTVRLYEPGYRER 594
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,579
Number of Sequences: 5004
Number of extensions: 59069
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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