Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M18
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0128 - 7043895-7045202 36 0.051
02_02_0130 + 7062063-7063370 33 0.21
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 33 0.36
12_02_0915 - 24252495-24253079,24253560-24254759,24255234-242553... 30 1.9
08_02_1180 + 24980042-24980784,24980874-24981168,24981650-249818... 30 1.9
07_01_0180 + 1266975-1267550 30 1.9
01_06_0207 + 27534226-27534723 29 4.4
12_02_0780 + 23094989-23095380,23096132-23096573,23096687-230973... 29 5.8
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694... 29 5.8
03_05_0388 + 23726957-23727418,23730016-23730262,23731072-237312... 29 5.8
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146... 29 5.8
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348... 28 7.7
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 28 7.7
>02_02_0128 - 7043895-7045202
Length = 435
Score = 35.5 bits (78), Expect = 0.051
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 492 LHSYGSAATAASVDAGYAPFNGTTFSGRSMRYVLHCSSHAGLAGDEYLTPTQRAQKQIRR 671
LHS S A AASV A AP T + ++ VL S+ +A + P+Q A++Q R
Sbjct: 117 LHSNNSLALAASVMAALAPAAPTVVALKASAGVLLASAAVTMAAVNKIQPSQLAEEQ-RN 175
Query: 672 LKSMLSQAKRDL 707
+ Q +RD+
Sbjct: 176 ATRLWRQLERDV 187
>02_02_0130 + 7062063-7063370
Length = 435
Score = 33.5 bits (73), Expect = 0.21
Identities = 24/72 (33%), Positives = 36/72 (50%)
Frame = +3
Query: 492 LHSYGSAATAASVDAGYAPFNGTTFSGRSMRYVLHCSSHAGLAGDEYLTPTQRAQKQIRR 671
LHS S AASV A AP T + ++ VL S+ +A + P+Q A++Q R
Sbjct: 114 LHSNNSLLLAASVMAALAPAAPTVVALKASAGVLLASAAVTMAAVNKIQPSQLAEEQ-RN 172
Query: 672 LKSMLSQAKRDL 707
+ Q +RD+
Sbjct: 173 ATRLWRQLERDV 184
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 32.7 bits (71), Expect = 0.36
Identities = 21/92 (22%), Positives = 42/92 (45%)
Frame = +3
Query: 258 KLIPIITENTPQKQRSDGSRLQEPGHRQRSHSFNSNAQQKPKKSCLKTQDACIDRNLSMT 437
KL+ I + +P + ++ ++E + +++K KK D +D+ L+
Sbjct: 215 KLLAEIDDTSPPTEEAEP--VEEVPAPDADDALGKKSKKKKKKGGFTVDDEDVDKILAEF 272
Query: 438 DSAHTPPGSPEDLPDDESLHSYGSAATAASVD 533
+ P PE P+ E++ G+ A + SVD
Sbjct: 273 EDQPPPVDDPE--PEPEAVKDVGNVAASTSVD 302
>12_02_0915 -
24252495-24253079,24253560-24254759,24255234-24255303,
24257127-24257188
Length = 638
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 429 SMTDSAHTPPGSPEDLPDDESLHSYGSAATAASVDAGYAPFNGTT 563
S +A PP + LP ++ +SYGS+ + A+ D +AP TT
Sbjct: 501 SAAAAADMPPAARSLLPREQDGNSYGSSRSTATEDDQWAPPPTTT 545
>08_02_1180 +
24980042-24980784,24980874-24981168,24981650-24981823,
24981999-24982187,24982290-24982403,24982517-24982837,
24983485-24983542,24984216-24984337
Length = 671
Score = 30.3 bits (65), Expect = 1.9
Identities = 38/179 (21%), Positives = 74/179 (41%)
Frame = +3
Query: 279 ENTPQKQRSDGSRLQEPGHRQRSHSFNSNAQQKPKKSCLKTQDACIDRNLSMTDSAHTPP 458
EN+P+ +S GSR + + H ++N Q + K K +A + +D+ P
Sbjct: 38 ENSPRMAKSSGSRQVQ---NKLQHKASNNIQSRSPKP-RKVVNAAKSAEVRRSDTVRVPS 93
Query: 459 GSPEDLPDDESLHSYGSAATAASVDAGYAPFNGTTFSGRSMRYVLHCSSHAGLAGDEYLT 638
+P +L ++ + A +VD N + HC G DE
Sbjct: 94 RAPSELSEETD----DIVSEAGTVDDSKG--NEEAKEIDVLDEAPHCDQSTG-TDDEI-- 144
Query: 639 PTQRAQKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVXELRLYKTSICSPDEKSTSXEI 815
+ +K + K ++ Q +L+ K ++ Q +EV L + S+ P+ S++ ++
Sbjct: 145 -PEIEEKIVDDEKPVVYQRNEELQSKIDKLEQELREVAALEVSLYSVL-PEHGSSAHKL 201
>07_01_0180 + 1266975-1267550
Length = 191
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +3
Query: 498 SYGSAATAASVDAGYAPFNGT-TFSGRSMRYVLHCSSHAGLAGDEYLTPTQRAQKQIRRL 674
++G A+ AG +P G SG +L+C G G +R ++++RR
Sbjct: 23 AFGYDGVASDAAAGLSPVVGAGDGSGGGGDVLLYCDGGGGGGGGGEDGEEER-RRRLRRK 81
Query: 675 KSMLSQAKRDLEKKDSEIFQLTKEVXELRLYKTSICS 785
S A+R ++ + +L + ELR + ++ S
Sbjct: 82 ISNRESARRSRARRRQRVEELERAADELRAERRALAS 118
>01_06_0207 + 27534226-27534723
Length = 165
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 267 PIITENTPQKQRSDGS-RLQEPGHRQRSHSFNSNAQQ 374
P I T K+ S GS R QE G R H +N N ++
Sbjct: 93 PSIDGTTTTKKASKGSYRRQEGGRNPRMHEYNKNGEK 129
>12_02_0780 +
23094989-23095380,23096132-23096573,23096687-23097311,
23098240-23098280,23098371-23098439,23098779-23098879,
23099422-23099500,23099946-23100044,23100123-23100191,
23100283-23100332,23100416-23100497,23100997-23101091,
23101263-23101395
Length = 758
Score = 28.7 bits (61), Expect = 5.8
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Frame = +3
Query: 165 CAANVSGNFRRSSSLRLRGEKMVQ--RSPLCTR--KLIPIITENTPQKQRSDGSRLQEPG 332
C A+ S + R++S L Q +S + ++ L +T + R+D + ++ G
Sbjct: 242 CEASCSNSNRKASLLSRSPFDSQQPLQSTIASKITNLATKVTNKVRSRVRADENGIEREG 301
Query: 333 HRQRSHSFNSNAQQKPKKSCLKTQDACIDRNLSMTDSAHTPPGSPEDLPDDES 491
SH + +A+++P S T R T+ + PG + DES
Sbjct: 302 GSGESHCSDRDAKEEPTSSGTTTPRGDAPRGAFATE--ESSPGKTAKMNSDES 352
>03_05_0882 +
28467691-28467730,28468386-28468675,28469262-28469411,
28470126-28470214,28470331-28470440,28470545-28470639,
28471110-28471162,28471374-28471539,28471909-28472001,
28472304-28472432,28472549-28472668,28472862-28472942,
28473495-28473602,28473895-28474038,28474120-28474218,
28474300-28474379,28474830-28474922,28475197-28475320
Length = 687
Score = 28.7 bits (61), Expect = 5.8
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 1/188 (0%)
Frame = +3
Query: 207 LRLRGEKMVQRSPLCTRKLIPIITENTPQKQR-SDGSRLQEPGHRQRSHSFNSNAQQKPK 383
L GE+M + L K + E T K + S+ S L E ++ + + A+++ +
Sbjct: 376 LATNGEEMSKLEALLLDKNRKMEHELTQLKVKISEKSNLLEEAEKKIAE-LTAKAEEQ-Q 433
Query: 384 KSCLKTQDACIDRNLSMTDSAHTPPGSPEDLPDDESLHSYGSAATAASVDAGYAPFNGTT 563
K LK +D + + S TD + L +D L GS A D +AP +
Sbjct: 434 KLILKLEDDIL-KGYSSTDRRTS-------LLNDWDLQEIGSNEVAEGTDPRHAPQDQDQ 485
Query: 564 FSGRSMRYVLHCSSHAGLAGDEYLTPTQRAQKQIRRLKSMLSQAKRDLEKKDSEIFQLTK 743
SM V+ C+ D + T + ++++RRLK +LEK ++ QL
Sbjct: 486 ---SSMLKVI-CNQR-----DRFRTRLRETEEELRRLKEKYEMLVVELEKTKADNVQLYG 536
Query: 744 EVXELRLY 767
++ ++ Y
Sbjct: 537 KIRYVQDY 544
>03_05_0388 +
23726957-23727418,23730016-23730262,23731072-23731220,
23731313-23731597,23731665-23731889,23734251-23734445
Length = 520
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 444 AHTPPGSPEDLPDDESLHSYGSAATAASVDAGYAPFNGTTFSG 572
A PP DL YG++ +A+ AG AP NG ++ G
Sbjct: 470 ASNPPAPAVDLSYGSYPPPYGASYGSAASGAGPAPHNGGSYGG 512
>02_01_0224 -
1461924-1462227,1462602-1462798,1463059-1463213,
1464101-1464207,1464289-1464375,1465332-1465414,
1465959-1466027,1466332-1466658,1466744-1466957,
1467170-1467267,1467516-1467554,1467672-1468160
Length = 722
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 648 RAQKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVXELR 761
R KQ+ +K+ S+ K+D +KD EI E+ LR
Sbjct: 168 RVSKQMNDVKNECSELKKDRTRKDLEIKAKEAEIQSLR 205
>04_04_0516 +
25833801-25834046,25834412-25834532,25834636-25834821,
25834918-25834944,25836203-25836351,25836553-25836602,
25837181-25837289,25837395-25837532,25838184-25838463,
25838533-25838656,25838994-25839003
Length = 479
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 471 LQVTLVVCGQNQSCSSFDLYKH 406
L V L+ CG NQSCS F H
Sbjct: 327 LPVLLLTCGYNQSCSQFSNGMH 348
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/72 (27%), Positives = 28/72 (38%)
Frame = +3
Query: 402 QDACIDRNLSMTDSAHTPPGSPEDLPDDESLHSYGSAATAASVDAGYAPFNGTTFSGRSM 581
+DA D M+ SP + E S G+ TA+ + A APFN +T
Sbjct: 1497 RDAGEDAQEQMSSGGENEKSSPSE---SEKNDSPGAKETASKLSAAAAPFNPSTVPAFGS 1553
Query: 582 RYVLHCSSHAGL 617
+ H GL
Sbjct: 1554 MAIPGFREHGGL 1565
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,065,035
Number of Sequences: 37544
Number of extensions: 398608
Number of successful extensions: 1205
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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