Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M18
(815 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17) 33 0.21
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 33 0.28
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 33 0.28
SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_24324| Best HMM Match : PDZ (HMM E-Value=0.013) 31 1.1
SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28) 31 1.5
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013) 30 2.6
SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_7900| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07) 29 3.4
SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08) 29 3.4
SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05) 29 3.4
SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17) 29 6.0
SB_56338| Best HMM Match : DUF970 (HMM E-Value=1.9) 29 6.0
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_5796| Best HMM Match : RIO1 (HMM E-Value=0) 29 6.0
SB_47131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 28 7.9
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 28 7.9
SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71) 28 7.9
>SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)
Length = 1693
Score = 33.5 bits (73), Expect = 0.21
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 240 SPLCTRKLIPIITENTPQKQRSDGSRLQEPGHRQ-RSHSFNSNAQQKPKKSCLKTQDACI 416
SP R + + E+ P+ G+ L E + + S S A ++ ++C T+DA
Sbjct: 1244 SPQHPRPNLNTLDESKPEGAWQSGTDLTERRKKLCNTLSRRSLASRRDARACASTEDAAA 1303
Query: 417 DRNLSMTDSAHTP-PGS 464
+ T SAHTP PGS
Sbjct: 1304 GTASAGTPSAHTPVPGS 1320
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 33.1 bits (72), Expect = 0.28
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 14/137 (10%)
Frame = +3
Query: 396 KTQDACIDRNLSMTDSAHTPPGSPEDLPDDESLH---SYGSAATAASVDAG----YAPFN 554
KT +A D L +DS + DL D S+H SYGS+++ A V +G
Sbjct: 5 KTLNASYDSTLQSSDSMY-------DLSDTGSVHSFGSYGSSSSLAMVQSGAPELLVSLC 57
Query: 555 GTTFSGRSMRYVLHCSSHAGL----AGDEY--LTPTQRAQKQIRRLKSMLSQAKRDLEKK 716
+ +GR VL S+ + A D Y +T + KQ+ + K+ + ++ D E
Sbjct: 58 YQSLTGRLTVEVLKASNLRNVAMQRAPDSYVKVTLVSSSGKQVAKSKTTIRKSMADPEYN 117
Query: 717 DSEIFQLT-KEVXELRL 764
+S +++++ K++ E+ L
Sbjct: 118 ESFVYEISEKDLPEMTL 134
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 33.1 bits (72), Expect = 0.28
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 648 RAQKQIRRLKSM----LSQAKRDLEKKDSEIFQLTKEVXELRLYKTSI 779
R Q +++R S L+ KRDLEKKD+ + QLT E E+ +S+
Sbjct: 1180 RLQGELKRTTSFKDRELNNLKRDLEKKDNRLEQLTMESEEMHRSASSL 1227
>SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 910
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 465 VTLVVCGQNQSCSSFDLYKHLVFLNRTFWAFAEHL 361
V L VC + C+ DLY H+VF F + AE L
Sbjct: 867 VRLKVCMSARRCTQLDLYSHIVFYEFYFTSSAELL 901
>SB_24324| Best HMM Match : PDZ (HMM E-Value=0.013)
Length = 406
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/82 (24%), Positives = 41/82 (50%)
Frame = +3
Query: 174 NVSGNFRRSSSLRLRGEKMVQRSPLCTRKLIPIITENTPQKQRSDGSRLQEPGHRQRSHS 353
++ RR +LRLR E+ Q T+K T ++P +Q DGS+ + +++
Sbjct: 249 DIRKEIRRQEALRLRLEEAKQLEDDTTQKP-DRGTTSSPDQQARDGSQEADSRPQRQKSG 307
Query: 354 FNSNAQQKPKKSCLKTQDACID 419
+++ KP+++ ++ ID
Sbjct: 308 DQTDSSNKPQRTLSASEKRAID 329
>SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)
Length = 552
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 642 TQRAQKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVXELR 761
T+R + + +RL++ + + DLE++ S I Q KE EL+
Sbjct: 185 TERLRSEFQRLETDIKERTDDLEQRRSSIEQNNKEYSELK 224
>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
Length = 663
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/39 (25%), Positives = 27/39 (69%)
Frame = +3
Query: 645 QRAQKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVXELR 761
++ + +++ +++ L++ ++DLE+KD + TKE +L+
Sbjct: 10 EKLRGKLKSIQAELNKTQQDLEEKDKDFLSQTKEYSKLK 48
>SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +3
Query: 579 MRYVLHCSSHAGLAGDEYLTPTQRAQKQIRRLKSMLSQAKRDLEKK 716
M Y+ S H+G E +TP + ++++RR ++ ++ +K ++K
Sbjct: 75 MDYIYDTSLHSGAESTEMVTPEEEERRKLRRERNKVAASKCRQKRK 120
>SB_7900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 627 EYLTPTQRA-QKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVXELRLYKTSICSPDEKS 800
E L +++A +K++ L+ L AK+D ++ ++ E+ E+R + S+C P +S
Sbjct: 35 EALERSKKAHKKEVISLQGKLKVAKKDYSMSLRKLEGISDEIHEVRQSRISLCLPSRES 93
>SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)
Length = 711
Score = 29.5 bits (63), Expect = 3.4
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +3
Query: 204 SLRLRGEKMVQRSPLCTRKLIPIITENTPQKQRSDGSRLQEP----GHRQRSHSFNSNAQ 371
SLRL+G+ + S +KL PI +P + D S L +P G + RS+ +NA
Sbjct: 24 SLRLKGKNKPKSSDDSPKKLHPIF---SPVSESPDKSTLPQPPAFVGLKNRSNLCYANAV 80
Query: 372 QKPKKSCLKTQDACIDRNLSMTDSAH 449
+ ++C D D + MT A+
Sbjct: 81 IQVLRNCPGFVDFVGDLDKQMTTEAN 106
>SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08)
Length = 629
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 222 EKMVQRSPLCTRKLIPIITENTP--QKQRSDGSRLQEPGHRQRSHSFNSNAQQKPK--KS 389
EK+V + +K + + T +TP RS G L+ + + N N ++ S
Sbjct: 257 EKLVNSALGSMKKGMIVDTRSTPAVMNSRSKGGGLEPESNYPQWKRSNHNIEKHTVLIDS 316
Query: 390 CLKTQDACIDRNLSM 434
K +AC D+NLSM
Sbjct: 317 VCKLMEACFDQNLSM 331
>SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)
Length = 511
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 302 QRWFSTPRAGSSPAESFI 355
QRWF PR G AESF+
Sbjct: 253 QRWFRAPREGQESAESFL 270
>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
Length = 905
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/81 (22%), Positives = 33/81 (40%)
Frame = +3
Query: 291 QKQRSDGSRLQEPGHRQRSHSFNSNAQQKPKKSCLKTQDACIDRNLSMTDSAHTPPGSPE 470
+ ++S + +P ++S + + + + +KSC + S A TPP S
Sbjct: 565 EAEKSRADHVSKPAEPKKSRADHVSKPAEAEKSCADHLSKPAEAEKSRASQAKTPPKSER 624
Query: 471 DLPDDESLHSYGSAATAASVD 533
D ++ S A A VD
Sbjct: 625 TGDDYVNIRSKPKMAIAQHVD 645
>SB_56338| Best HMM Match : DUF970 (HMM E-Value=1.9)
Length = 554
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 369 QQKPKKSCLKTQDACIDRNLSMTDSAHTPPGSPEDLPDD 485
Q + K+ L QD+CI R + + G+ D+PD+
Sbjct: 420 QYQSKREELSVQDSCILRGARVASPRRSSRGTSRDMPDE 458
>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1950
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 327 PGHRQRSHSFNSNAQQKPKKSCLKTQDACIDRNLSMTDSAHTPPGSPEDLPDDESLHSY 503
PG+ Q S+ NA + K K ++ D L++ D +TP + +D P E HSY
Sbjct: 1729 PGYAQ-SNGKVENAIKTAKNLMKKATESNKDPYLALLDWRNTPSETFKDCPIGEPRHSY 1786
>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1338
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 258 KLIPIITENTPQKQRSDGSRLQEPGHRQRSHSFNSNAQQK 377
+L PI T TP + R+Q+ GH R FN ++ K
Sbjct: 273 RLSPIKTACTPDDKEEGRDRIQDGGHELRFRVFNGFSRLK 312
>SB_5796| Best HMM Match : RIO1 (HMM E-Value=0)
Length = 1329
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +3
Query: 291 QKQRSDGSR-LQEPGHRQRSHSFNSNAQQKPKKSCLKTQDACIDRNLSMTDSAHTPPGSP 467
Q+ S GSR Q+P QRS S S QKP+ D TD P P
Sbjct: 893 QRSSSIGSRDTQKPQANQRSSSIGSRDTQKPQADQRSFSIGSRDTQKPQTDQRSYSPPPP 952
Query: 468 E 470
+
Sbjct: 953 D 953
>SB_47131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 726
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/69 (21%), Positives = 29/69 (42%)
Frame = +3
Query: 555 GTTFSGRSMRYVLHCSSHAGLAGDEYLTPTQRAQKQIRRLKSMLSQAKRDLEKKDSEIFQ 734
G TF GR +V HC + D + K+IR+ + +++E E+
Sbjct: 509 GCTFEGRQHAHVAHCENALQAHLDMACGTIRDNNKEIRKNNKKIRDNNKEIETLHEELNT 568
Query: 735 LTKEVXELR 761
+ + +L+
Sbjct: 569 ANQTIRKLK 577
>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = +3
Query: 645 QRAQKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVXELRLYKTSICSPDEKSTSXEI 815
Q +K++ K+ + + KR++++ ++ + KEV E + K + + + T E+
Sbjct: 214 QETKKEVHETKTKVDETKREVQETKKDVQETKKEVQETKT-KVDETNKEVQETKKEV 269
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +3
Query: 579 MRYVLHCSSHAGLAGDEYLTPTQRAQKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVXEL 758
+R+++ C +A + + + QI LK+ +S K+ ++KD I +L +E+ EL
Sbjct: 1245 LRFLVVCGEANDVA--DLTRQKEDLELQIPTLKAKVSLLKKACKEKDDFIEKLNEEIKEL 1302
Query: 759 R 761
R
Sbjct: 1303 R 1303
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 654 QKQIRRLKSMLSQAKRDLEKKDSEIFQL 737
QK+I LK+ML AKRD ++K +I +L
Sbjct: 1610 QKEIFELKAMLDIAKRDGDRKGFQIEEL 1637
>SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)
Length = 628
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 432 MTDSAHTPPGSPEDLPDDE 488
M + H+PPG P +L DDE
Sbjct: 516 MRNQRHSPPGDPTELMDDE 534
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,452,803
Number of Sequences: 59808
Number of extensions: 479372
Number of successful extensions: 1568
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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