Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M18
         (815 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    29   0.23 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   0.91 
AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless male-spe...    24   6.4  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    23   8.5  

>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 279 ENTPQKQRSDGSRLQEPGHRQRSHSFNSNAQQKPKKSCLKTQ 404
           +  PQ+Q   G++ Q+   +Q+ H   SNA Q  ++  L+ +
Sbjct: 79  QRQPQRQAVVGTQQQQQRRQQQQHQQRSNATQAQRREQLRNE 120


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 26.6 bits (56), Expect = 0.91
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +3

Query: 618 AGDEYLTPTQRAQKQIRRLKS---MLSQAKRDLEKKDSEIFQLTKEVXELRLYKTSI 779
           +GD+ L  TQ  QK   RLK+    L  AK+D+     E   L  E  +L   KT +
Sbjct: 249 SGDKQLLLTQEIQKAQDRLKNAQKALKDAKKDVVTAKDEKSVLATEHQQLLREKTKL 305


>AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless
           male-specific zinc-fingerC isoform protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 291 QKQRSDGSRLQEPG-HRQRSHSFNSNAQQKPKKS 389
           Q+Q++   + Q P  H+Q+S    S+  Q+P +S
Sbjct: 248 QQQQTHHQQQQHPSSHQQQSQQHPSSQHQQPSRS 281


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 317 SRTIAALFLWRVFRDYWN 264
           SRT+A  F W V   Y N
Sbjct: 180 SRTVARSFKWEVLSSYMN 197


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 791,070
Number of Sequences: 2352
Number of extensions: 15115
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86487024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)