Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M18
(815 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 34 0.13
At4g38900.2 68417.m05511 bZIP protein vsf-1 protein, Lycopersico... 32 0.40
At2g47210.1 68415.m05896 myb family transcription factor contain... 32 0.52
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 30 2.1
At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid t... 29 2.8
At4g27610.2 68417.m03968 expressed protein 29 3.7
At4g27610.1 68417.m03967 expressed protein 29 3.7
At4g21550.1 68417.m03113 transcriptional factor B3 family protei... 29 3.7
At1g19980.1 68414.m02503 cytomatrix protein-related contains wea... 29 3.7
At4g38900.1 68417.m05510 bZIP protein vsf-1 protein, Lycopersico... 29 4.9
At5g24800.1 68418.m02928 bZIP transcription factor family protei... 28 6.4
At5g43310.1 68418.m05293 COP1-interacting protein-related contai... 28 8.5
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 28 8.5
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 28 8.5
At2g30500.1 68415.m03715 kinase interacting family protein simil... 28 8.5
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro... 28 8.5
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 267 PIITENTPQKQRSDGSRLQEPGHRQRSHSFNSNAQQKP 380
P++T+N P+K S+ + L+ G +HS NSNA + P
Sbjct: 1545 PLVTDNLPEKDTSE-TLLKSVGRNHETHSPNSNAVELP 1581
>At4g38900.2 68417.m05511 bZIP protein vsf-1 protein, Lycopersicon
esculentum, PIR2:S52203
Length = 547
Score = 32.3 bits (70), Expect = 0.40
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
Frame = +3
Query: 405 DACIDRNLSMTDSAHTPPGSPEDLPDDESLHSY--GSAATAASVDAGYAPFNGTTFSGRS 578
D+C LS D + PP SP + S + G++ A S++ FN F+
Sbjct: 323 DSCFMEKLSFGDESLKPPPSPGSMSRKVSPTNSVDGNSGAAFSIE-----FNNGEFTAAE 377
Query: 579 MRYVLHCSSHAGLAGDEYLTPTQRAQKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVXEL 758
M+ + +A D+ K+++R+ + A R E+K I +L +V L
Sbjct: 378 MKKI--------MANDKLAEMAMSDPKRVKRILANRQSAARSKERKMRYIVELEHKVQTL 429
Query: 759 RLYKTSI 779
+ T++
Sbjct: 430 QTEATTL 436
>At2g47210.1 68415.m05896 myb family transcription factor contains
Pfam profile: PF00249 myb DNA-binding domain
Length = 441
Score = 31.9 bits (69), Expect = 0.52
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +3
Query: 648 RAQKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVXELRLYKTSICSPD 791
R +++ R L +LSQ++ EKKD+EI K + E+RL PD
Sbjct: 201 RDRERKRALSMVLSQSRHQ-EKKDAEILAEAKRITEMRLAARRAEEPD 247
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Frame = +3
Query: 315 RLQEPGHRQRSHSFNSNAQQKPKK--------SCLKTQDAC-IDRNLSMTDSAHTPPGSP 467
RLQE R+R H N Q+ +K S K +DAC +++ T AH S
Sbjct: 869 RLQEAKERERLHRENQEHQENERKQHEYSGEESDEKERDACEMEKTCETTKEAHGEQSSN 928
Query: 468 EDLPD 482
E L D
Sbjct: 929 ESLSD 933
>At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein GI:2627141 from (Picea abies); contains
Pfam profile PF00234 Protease inhibitor/seed storage/LTP
family
Length = 180
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +3
Query: 363 NAQQKPKKSCLKTQDACIDRNLSMTDSAHTPPGSPEDLPDDESLHSYGSAATAASVDAGY 542
NA PK +C D + + + T+S+ TPP +P+ P + GS +T + +
Sbjct: 96 NALDLPK-ACGAKADVSLCKTSAGTNSSSTPPATPKTPPASSTSTGTGSGSTGNAAPSTA 154
Query: 543 AP 548
P
Sbjct: 155 KP 156
>At4g27610.2 68417.m03968 expressed protein
Length = 334
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/163 (15%), Positives = 65/163 (39%)
Frame = +3
Query: 273 ITENTPQKQRSDGSRLQEPGHRQRSHSFNSNAQQKPKKSCLKTQDACIDRNLSMTDSAHT 452
+ ++ K +S+GS +P S SC + D C R++ T+S
Sbjct: 44 LKQSLDSKPQSNGSAGLKPNGTSERQKSTSCCLHSTTSSCTQNNDFCCFRSIPGTESV-- 101
Query: 453 PPGSPEDLPDDESLHSYGSAATAASVDAGYAPFNGTTFSGRSMRYVLHCSSHAGLAGDEY 632
+++ ++ + + ++ +V A + NG ++ R L + +
Sbjct: 102 ---EGKEVTSEQMISASDTSLPLVTVPAPSSKENGVMWATSPDRLELPPRPYNHNSNCSD 158
Query: 633 LTPTQRAQKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVXELR 761
I + ++ + ++ L+++D I ++ +++ EL+
Sbjct: 159 SPCVSETSSDIFSKREVIQKLRQQLKRRDDMIQEMQEQILELQ 201
>At4g27610.1 68417.m03967 expressed protein
Length = 334
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/163 (15%), Positives = 65/163 (39%)
Frame = +3
Query: 273 ITENTPQKQRSDGSRLQEPGHRQRSHSFNSNAQQKPKKSCLKTQDACIDRNLSMTDSAHT 452
+ ++ K +S+GS +P S SC + D C R++ T+S
Sbjct: 44 LKQSLDSKPQSNGSAGLKPNGTSERQKSTSCCLHSTTSSCTQNNDFCCFRSIPGTESV-- 101
Query: 453 PPGSPEDLPDDESLHSYGSAATAASVDAGYAPFNGTTFSGRSMRYVLHCSSHAGLAGDEY 632
+++ ++ + + ++ +V A + NG ++ R L + +
Sbjct: 102 ---EGKEVTSEQMISASDTSLPLVTVPAPSSKENGVMWATSPDRLELPPRPYNHNSNCSD 158
Query: 633 LTPTQRAQKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVXELR 761
I + ++ + ++ L+++D I ++ +++ EL+
Sbjct: 159 SPCVSETSSDIFSKREVIQKLRQQLKRRDDMIQEMQEQILELQ 201
>At4g21550.1 68417.m03113 transcriptional factor B3 family protein
low similarity to SP|Q01593 Abscisic acid-insensitive
protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous
protein homolog {Oryza sativa}; contains Pfam profile
PF02362: B3 DNA binding domain
Length = 721
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = +3
Query: 150 HDEHCCAANVSGNFRRSSSLRLRGEKMVQRSPLCTRKLIPIITENTPQKQRSDGSRLQE 326
HD C A N RR SL LR EK RKL+ + + Q ++ S E
Sbjct: 583 HDRCCSCAVCDTNKRRRRSLLLRREKKQMEKEDNARKLLEQLNSDNGLHQSANNSENHE 641
>At1g19980.1 68414.m02503 cytomatrix protein-related contains weak
similarity to CAST1 [Rattus norvegicus]
gi|22138113|gb|AAL07517
Length = 342
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +3
Query: 624 DEYLTPTQRAQKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEV 749
++ + Q + I RLK+ +++ + + KKD EI +LT+++
Sbjct: 212 EQLQSSNQEKDETISRLKAKMAEMETNSTKKDEEISKLTRDL 253
>At4g38900.1 68417.m05510 bZIP protein vsf-1 protein, Lycopersicon
esculentum, PIR2:S52203
Length = 553
Score = 28.7 bits (61), Expect = 4.9
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
Frame = +3
Query: 405 DACIDRNLSMTDSAHTPPGSPEDLPDDESLHSY--GSAATAASVDAGYAPFNGTTFSGRS 578
D+C LS D + PP SP + S + G++ A S++ FN F+
Sbjct: 323 DSCFMEKLSFGDESLKPPPSPGSMSRKVSPTNSVDGNSGAAFSIE-----FNNGEFTAAE 377
Query: 579 MRYVLHCSSHAGLAGDEYLTPTQRAQKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVXEL 758
M+ ++ A +A + + + R+ + A R E+K I +L +V L
Sbjct: 378 MKKIMANDKLAEMAMSD--PKRVKRNDPLFRILANRQSAARSKERKMRYIVELEHKVQTL 435
Query: 759 RLYKTSI 779
+ T++
Sbjct: 436 QTEATTL 442
>At5g24800.1 68418.m02928 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H2
GI:10954096
Length = 277
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 618 AGDEYLTPTQRAQKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVXELR 761
AG +T K+IRR+ S AKR +K + L +V L+
Sbjct: 109 AGQSEMTNDPNDLKRIRRMNSNRESAKRSRRRKQEYLVDLETQVDSLK 156
>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
similarity to COP1-Interacting Protein 7 (CIP7)
[Arabidopsis thaliana] GI:3327868
Length = 1237
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 297 QRSDGSRLQEPGHRQRSHSFNSNAQQKPKKSCLKTQDACIDRNLSMTDSAHT 452
++S S + E + SFNSN +P + T +A +NL D T
Sbjct: 1161 KKSQSSSVSEHHTESNNASFNSNEDHEPAVTAATTSEAFTLKNLISQDETPT 1212
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +3
Query: 291 QKQRSDGSRLQEPGHRQRSHSFNSNAQ-QKPKKSCLKTQDACIDRNLSMTDSAHTPPGSP 467
+++ DGSR Q P HR RS S + KS L Q + I + + +P SP
Sbjct: 315 RRRLRDGSRSQSPRHRSRSQSPRKRQPISQDLKSRLGPQRSPIRGGRTSPAESLSPSHSP 374
Query: 468 EDLPDDESLHSY 503
P L SY
Sbjct: 375 SP-PGKRGLVSY 385
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +3
Query: 291 QKQRSDGSRLQEPGHRQRSHSFNSNAQ-QKPKKSCLKTQDACIDRNLSMTDSAHTPPGSP 467
+++ DGSR Q P HR RS S + KS L Q + I + + +P SP
Sbjct: 498 RRRLRDGSRSQSPRHRSRSQSPRKRQPISQDLKSRLGPQRSPIRGGRTSPAESLSPSHSP 557
Query: 468 EDLPDDESLHSY 503
P L SY
Sbjct: 558 SP-PGKRGLVSY 568
>At2g30500.1 68415.m03715 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 517
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 624 DEYLTPTQRAQKQIRRLKSMLSQAKRDLEKKDSEIFQLTKEVXE 755
D Y+ +K++ +L+ L+ K L+ +D+EI L V +
Sbjct: 315 DTYINKLNAEKKEVLKLQERLAMVKTSLQDRDNEIRALKTAVSD 358
>At2g03140.1 68415.m00267 CAAX amino terminal protease family
protein very low similarity to SP|Q40863 Late
embryogenesis abundant protein EMB8 from Picea glauca;
contains Pfam profile PF02517 CAAX amino terminal
protease family protein
Length = 1805
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/102 (25%), Positives = 43/102 (42%)
Frame = +3
Query: 420 RNLSMTDSAHTPPGSPEDLPDDESLHSYGSAATAASVDAGYAPFNGTTFSGRSMRYVLHC 599
RNL + +S+ PP +P D SL A + A + +G A + + F G+S+ +
Sbjct: 42 RNLVLVNSSIFPPPFDGSVPLDSSL-----APSLAGIASGLAVYLSSRFFGKSLEKISDK 96
Query: 600 SSHAGLAGDEYLTPTQRAQKQIRRLKSMLSQAKRDLEKKDSE 725
+ G+ L T + L+ L D EK S+
Sbjct: 97 IVDDVVVGEWILFTTPTPFNRFVLLRCSLLSFDDDSEKSLSD 138
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,994,693
Number of Sequences: 28952
Number of extensions: 313706
Number of successful extensions: 1036
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -