Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M17
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    31   0.20 
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    27   3.3  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.8  

>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -2

Query: 722 AGLVRLCFIEMNVKYHVILLCLHLTVLFQPLADVIKTNNPEI 597
           +G+ RL F  MN++  V ++   L +L + LA ++ TNN E+
Sbjct: 268 SGITRLHFYTMNLEKAVKMIIERLGLLDENLAPIVDTNNVEL 309


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 21/60 (35%), Positives = 34/60 (56%)
 Frame = -1

Query: 186 LVLR*ASALYL*QISYFSELSQYENVNSSL*FVIQLLYNLI*YNFSSYRGIWNKKSIHIG 7
           ++L+ +S   L  I  +   SQ +  +SS   V  LLYN+I +NFS   G+ +K++I  G
Sbjct: 1   MLLKVSSCEPLVPIKQWIHTSQLDLSDSSS-LVADLLYNIIKFNFS---GLEDKRAIFTG 56


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 475 VYWQPQFSLRSSIKITYF 422
           V W PQFSL+   K TYF
Sbjct: 278 VSWFPQFSLKKLAKDTYF 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,303
Number of Sequences: 5004
Number of extensions: 62218
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)