Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M17
         (837 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0152 + 28044733-28045032,28045131-28045220,28045770-280458...    29   4.6  
11_01_0524 - 4115125-4115491,4116096-4116180,4116796-4116938,411...    29   6.1  

>05_07_0152 +
           28044733-28045032,28045131-28045220,28045770-28045829,
           28045912-28045977,28046161-28046226,28046330-28046405,
           28046721-28046785,28046879-28046971,28047302-28047322,
           28047600-28047692,28047939-28047998,28048157-28048222,
           28048314-28048373,28048498-28048612,28048738-28048850
          Length = 447

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -2

Query: 332 FVFTTNKCAFTATNRK-QTCSYYYYNIYHFIPIGLCIQVNMI-VVFFLNNS*SLDKHLHY 159
           F F T K +   TN    TC+     I      G+ + +  + VVFFL +S S D H++Y
Sbjct: 285 FGFVTRKISSGLTNSDLATCALGAIQISS---AGMTLSLLAVAVVFFLKDSISQDSHMYY 341

Query: 158 TCS 150
           T S
Sbjct: 342 TLS 344


>11_01_0524 -
           4115125-4115491,4116096-4116180,4116796-4116938,
           4117449-4117654,4118650-4118748,4118958-4118993,
           4119222-4119276,4119505-4119690,4120572-4120759
          Length = 454

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 762 IGCTDGYVY-YPVYSRAC*AVFY*NECKISC 673
           IGC DG  + Y +YSR+C +++  +   ++C
Sbjct: 235 IGCEDGRAFVYDMYSRSCSSIYRLHSSPLTC 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,520,183
Number of Sequences: 37544
Number of extensions: 301627
Number of successful extensions: 477
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)