Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M17
         (837 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12107| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_12971| Best HMM Match : RBB1NT (HMM E-Value=4.1)                    30   2.7  
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_49606| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_5857| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.2  

>SB_12107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 23/84 (27%), Positives = 42/84 (50%)
 Frame = +3

Query: 210 YHVNLYT*PYRNKMINVVIIVTAGLFAISGSKSAFICCKYKEISLRNFRNFKVFYFLSNL 389
           Y+   Y  PY +K++  VI     LFAI G+ +  +C     +  R  R F  +Y ++NL
Sbjct: 18  YYPEYYQEPYESKVVRYVINALLFLFAIVGNIT--VC--LVPVRHRRMRTF-TYYLITNL 72

Query: 390 KHLSDFNEIIAK*VILILDLKLNW 461
             +SD   ++    +L+ + + +W
Sbjct: 73  A-VSDIFTMLCLPPLLVYEFQGSW 95


>SB_12971| Best HMM Match : RBB1NT (HMM E-Value=4.1)
          Length = 190

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/46 (36%), Positives = 31/46 (67%)
 Frame = +1

Query: 490 LQSP*NYTINIHIINSRSKLSILINCLIVIFIMKSLISGLFVLITS 627
           L++  N T+N H++N RS ++  IN L+V+ I++S+I  L + I +
Sbjct: 106 LKATDNATLNDHLVNHRS-IAAYIN-LVVLDILRSMIDPLPICIVA 149


>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/50 (30%), Positives = 30/50 (60%)
 Frame = +3

Query: 255 NVVIIVTAGLFAISGSKSAFICCKYKEISLRNFRNFKVFYFLSNLKHLSD 404
           ++ +I+ AG+  +  + +AF   +  +++ R  RNF VFY L+  +HL +
Sbjct: 149 SICVILPAGIMLVCLA-AAF---RVTKVAARQTRNFVVFYLLTRARHLKN 194


>SB_49606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +3

Query: 270 VTAGLFAISGSKSAFICCKYKEISLRNFRNFKVFYFLSNLKHLSDFNEIIAK*VILILDL 449
           + AGLFAI+ +    +CCK  ++ +R  R   +F     LK       I A  V   L+ 
Sbjct: 17  IGAGLFAITPAGERGMCCKAIKLGIRYLRQVTLFEEFVLLKDFEKRENIYANKVNTRLEE 76

Query: 450 K 452
           K
Sbjct: 77  K 77


>SB_5857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 555 TYKLFDCHFYYEKFDLWI 608
           TY+L  C F+YE++  WI
Sbjct: 26  TYRLGTCGFFYERYSYWI 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,952,499
Number of Sequences: 59808
Number of extensions: 408104
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)