Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M17
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016430-11|AAB65375.1|  387|Caenorhabditis elegans Hypothetical...    29   3.1  
Z75553-4|CAA99946.1|  389|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U40797-8|AAL08029.1|  332|Caenorhabditis elegans Serpentine rece...    28   9.5  

>AF016430-11|AAB65375.1|  387|Caenorhabditis elegans Hypothetical
           protein C05C8.8 protein.
          Length = 387

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 507 LYNKHTHYKQ*IKIINTYKLFDCHFYYEKFDLWIV 611
           LY K + + + ++ +  YKL DCH        W++
Sbjct: 192 LYGKKSKWLEIVEYVEHYKLVDCHHRSRHHSKWVI 226


>Z75553-4|CAA99946.1|  389|Caenorhabditis elegans Hypothetical
           protein ZC443.4 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 264 IIVTAGLFAISGSKSAFICCKYKEISLRNFRNFK 365
           +I+  G+  + GS+   I C + +  LR +R FK
Sbjct: 100 LILAEGIHGVYGSRGIEILCGHNDHLLRRYRRFK 133


>U40797-8|AAL08029.1|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein7 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/41 (26%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +1

Query: 538 RSKLSILIN--CLIVIFIMKSLISGLFVLITSASGWNSTVK 654
           R++LS+ +    +I+ F+M+ +   +F+L+ SA+ W + ++
Sbjct: 246 RAELSVTLTTFAMIISFLMRGICLIVFLLVPSAASWLAIIR 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,001,458
Number of Sequences: 27780
Number of extensions: 339998
Number of successful extensions: 637
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)