Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M16
         (841 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   7.0  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    21   9.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.2  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 373 NTKPTLPLMCGNSFSRAGLL 314
           N KP +  +CG S++R   L
Sbjct: 246 NQKPNVCRICGKSYARPSTL 265


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 266 HGKKHYDAQSHQRPPGQQSSPRETVATHQGQRWLRVH 376
           H K H    + +RP   +   R+ V     +R LRVH
Sbjct: 24  HLKTHMRLHTGERPYRCEHCDRQFVQVANLRRHLRVH 60


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 266 HGKKHYDAQSHQRPPGQQSSPRETVATHQGQRWLRVH 376
           H K H    + +RP   +   R+ V     +R LRVH
Sbjct: 177 HLKTHMRLHTGERPYRCEHCDRQFVQVANLRRHLRVH 213


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,571
Number of Sequences: 336
Number of extensions: 4816
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)