Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M16
(841 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 282 3e-76
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 281 4e-76
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 281 4e-76
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 35 0.093
06_01_0080 + 644021-645463 33 0.37
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.86
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 29 3.5
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 29 4.6
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 29 6.1
03_04_0243 + 19298293-19299117 28 8.1
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 282 bits (691), Expect = 3e-76
Identities = 136/232 (58%), Positives = 173/232 (74%), Gaps = 2/232 (0%)
Frame = +3
Query: 150 KLIQLLDXYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NP 323
KL QLLD Y K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N
Sbjct: 17 KLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNK 76
Query: 324 ALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPE 503
+L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL P
Sbjct: 77 EFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPS 136
Query: 504 KTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 683
+TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VY
Sbjct: 137 QTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVY 196
Query: 684 DSGTIFAPEILDIKPXDLRAKFQAGVANVXALSLAIGYPTIASXPHSIANGF 839
DSG++F+PE+LD+ DL KF +GV+ V ++SLAI YPTIA+ PH NG+
Sbjct: 197 DSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGY 248
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 281 bits (690), Expect = 4e-76
Identities = 136/232 (58%), Positives = 173/232 (74%), Gaps = 2/232 (0%)
Frame = +3
Query: 150 KLIQLLDXYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NP 323
KL QLLD Y K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N
Sbjct: 17 KLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNK 76
Query: 324 ALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPE 503
+L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL P
Sbjct: 77 DFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPS 136
Query: 504 KTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 683
+TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VY
Sbjct: 137 QTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVY 196
Query: 684 DSGTIFAPEILDIKPXDLRAKFQAGVANVXALSLAIGYPTIASXPHSIANGF 839
DSG++F+PE+LD+ DL KF +GV+ V ++SLAI YPTIA+ PH NG+
Sbjct: 197 DSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGY 248
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 281 bits (690), Expect = 4e-76
Identities = 136/232 (58%), Positives = 173/232 (74%), Gaps = 2/232 (0%)
Frame = +3
Query: 150 KLIQLLDXYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NP 323
KL QLLD Y K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N
Sbjct: 17 KLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNK 76
Query: 324 ALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPE 503
+L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL P
Sbjct: 77 DFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPS 136
Query: 504 KTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 683
+TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VY
Sbjct: 137 QTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVY 196
Query: 684 DSGTIFAPEILDIKPXDLRAKFQAGVANVXALSLAIGYPTIASXPHSIANGF 839
DSG++F+PE+LD+ DL KF +GV+ V ++SLAI YPTIA+ PH NG+
Sbjct: 197 DSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGY 248
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 34.7 bits (76), Expect = 0.093
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Frame = +3
Query: 237 ISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDK 407
I L + L+ + ++ L N AL+KL LPH ++GN+GF+ + + ++ D
Sbjct: 372 IGLLQKLVYLLLSANQLSGSVPRTLGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDL 431
Query: 408 LLENKVQAPARPGAIAPLSV----VIPAHN--TGLGPEKTSFFQALSI 533
+L++ A P + LS I HN G PEK S +L +
Sbjct: 432 ILDHNSFVGALPDHLGNLSARLISFIADHNKLAGSLPEKMSNLSSLEL 479
>06_01_0080 + 644021-645463
Length = 480
Score = 32.7 bits (71), Expect = 0.37
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 575 IVDDFNSTL*NLGRDRKSLEERGLLWTKAGVVGGND 468
I+D N N R K++EERGLL+ GV GG +
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEE 135
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.5 bits (68), Expect = 0.86
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +3
Query: 321 PALEK-LLPHIKGN---VGFVFTRGDLVEV--RDKLLENKVQAPARPGAIAPLSVVIPA 479
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = +3
Query: 561 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 713
E++ +++P D VG S +++ +++ P+S VV+ +Y+S + A +I
Sbjct: 346 EMLPSGFLIRPSD-VGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKI 395
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 691 PESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL 569
PE LT RP +G+ FN LR ++ +PT G + S+
Sbjct: 358 PEKNEPLTLRPIASGK-FNQLRTISIISPTAKEGLQKTVSM 397
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 377 GEHEANVALDVWQQFLEGWIVVQVVFDGFAHH 282
G HEA+ L W+ + GW + F GFA H
Sbjct: 189 GNHEASNYL--WELYYGGWAAPNIYFLGFAGH 218
>03_04_0243 + 19298293-19299117
Length = 274
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 472 MTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLMCGNSFS 329
+ TD+ + APG A A + S SRTS +P ++ PT P +S +
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSPRRARSSLT 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,961,966
Number of Sequences: 37544
Number of extensions: 594248
Number of successful extensions: 1665
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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