Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M16
         (841 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        229   2e-60
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.071
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        34   0.17 
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.7  
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              29   4.7  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   4.7  
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)                      29   6.2  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  29   6.2  
SB_57025| Best HMM Match : Fascin (HMM E-Value=0)                      29   6.2  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         29   6.2  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)               28   8.2  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  229 bits (561), Expect = 2e-60
 Identities = 107/151 (70%), Positives = 127/151 (84%)
 Frame = +3

Query: 159 QLLDXYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL 338
           Q LD YPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RKAI+ HL+NNP LEKL
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60

Query: 339 LPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 518
           LPHIKGN+GFVFT+ DL +VR  ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFF
Sbjct: 61  LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFF 120

Query: 519 QALSIPTKISKGTIEIINDVHILKPGDKVGA 611
           QAL+IPTKI++GTIEIINDVH++K  +K+ A
Sbjct: 121 QALAIPTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 35.1 bits (77), Expect = 0.071
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +3

Query: 273 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 389
           K T++RK +K HLDN P L K LP + G +  + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = -3

Query: 575 IVDDFNSTL*NLGRDRKSLEERGLLWTKAGVVGGNDD*QWG 453
           I+D  NS   +  R  K+LEERGLL+  +GV GG +  ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +3

Query: 414  ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 587
            E ++ +PA     +P S+        TGL P   S  Q LS+ T +   ++    D+   
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128

Query: 588  KPGDK 602
             PG K
Sbjct: 2129 TPGKK 2133


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 481 WAGMTTDNGAMAPGRAGAWTLFSNSL 404
           W+  T D     PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 173  VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKKHYDA 289
            VPKMFH     RG+ T+A  P + T +L+ R  G++  +A
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRRGLNA 3895


>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
          Length = 939

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -1

Query: 712 ISGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL--MISIVPFEIL 539
           +S + +VP+SY    TRP  NG+   +  + A E P+L+  F+    L  +I  +   I 
Sbjct: 162 LSVSNLVPDSYFDAFTRPIINGK---VEEKTAGEGPSLATMFEDDRHLQGVIQSIRDAIS 218

Query: 538 VGIERAWK 515
              + AWK
Sbjct: 219 NAFDMAWK 226


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 607  PTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 491
            P   P F+ C +L+ ++  ++ +    RAW+KEV S  R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878


>SB_57025| Best HMM Match : Fascin (HMM E-Value=0)
          Length = 504

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +1

Query: 331 RNCCHTSRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLPHCQSSFPPTTPALV 498
           R CCH     ++  S AET+ ++ T        L+L+P P P      P TT ALV
Sbjct: 148 RQCCHQQADKISRDSEAETATKTET----PPPWLRLLPAPYPRT----PTTTCALV 195


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
 Frame = -1

Query: 757  PAWNLARRSXGLMSRISGAKIVPESY-TCLTTRPYENGEMFNMLRRVASEAPTLSP---G 590
            P+ N    S  L     GA   P  + T  T+ PY +          AS +PT+SP    
Sbjct: 1193 PSTNNDPVSQPLFITTPGALFTPLPHETSATSPPYTSASPVPTTTPSASSSPTISPIGSS 1252

Query: 589  FKMCTSLMISIVPFEILVGIERAWKKEVFS------GPRPVLWAGMTTDNGAMAP 443
               C+++     P    +G ERA ++   S      G  P++  G    NG   P
Sbjct: 1253 LAQCSTVDSMDKPSLRPIGTERACRRATASPLPSMPGISPLIGGGKLVGNGDSVP 1307


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +3

Query: 501  EKTSFFQALSIP---TKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSY-GLV 668
            E  S  Q+ + P   T++S G+   +  V  +KP  + G  + T ++  N+S  S     
Sbjct: 2269 EPVSIMQSQNTPPVETELSAGSRTSLPKVSAIKPSVEYGQLDDTEIHETNLSASSIPSEK 2328

Query: 669  VKQVYDSGTIFAPEILDI 722
            VK ++ S T+  P  L I
Sbjct: 2329 VKSLFMSSTLDTPSSLSI 2346


>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
          Length = 509

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 418 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 308
           FS+S + T         KP    +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,760,836
Number of Sequences: 59808
Number of extensions: 644981
Number of successful extensions: 1795
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1789
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)