Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M16
(841 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 273 1e-73
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 272 3e-73
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 272 3e-73
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 46 4e-05
At3g50610.1 68416.m05534 hypothetical protein 29 2.9
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 2.9
At1g33410.1 68414.m04136 expressed protein 29 2.9
At1g58220.1 68414.m06612 myb family transcription factor contain... 29 3.8
At5g13260.1 68418.m01523 expressed protein 28 6.7
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 6.7
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 28 8.9
At5g07190.1 68418.m00819 embryo-specific protein 3, putative sim... 28 8.9
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 8.9
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 273 bits (669), Expect = 1e-73
Identities = 131/232 (56%), Positives = 171/232 (73%), Gaps = 2/232 (0%)
Frame = +3
Query: 150 KLIQLLDXYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NP 323
KL QLL+ Y + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H D N
Sbjct: 17 KLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQ 76
Query: 324 ALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPE 503
A LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL P
Sbjct: 77 AFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPS 136
Query: 504 KTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 683
+TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VY
Sbjct: 137 QTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVY 196
Query: 684 DSGTIFAPEILDIKPXDLRAKFQAGVANVXALSLAIGYPTIASXPHSIANGF 839
D+G++F PE+L++ DL KF AGV+ + ALSLAI YPT+A+ PH N +
Sbjct: 197 DNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAY 248
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 272 bits (666), Expect = 3e-73
Identities = 127/232 (54%), Positives = 173/232 (74%), Gaps = 2/232 (0%)
Frame = +3
Query: 150 KLIQLLDXYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NP 323
KL QL+D Y + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H +N N
Sbjct: 16 KLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNT 75
Query: 324 ALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPE 503
A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL P
Sbjct: 76 AILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPS 135
Query: 504 KTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 683
+TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VY
Sbjct: 136 QTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVY 195
Query: 684 DSGTIFAPEILDIKPXDLRAKFQAGVANVXALSLAIGYPTIASXPHSIANGF 839
D+G++F+PE+LD+ L KF +G++ V +L+LA+ YPT+A+ PH N +
Sbjct: 196 DNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAY 247
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 272 bits (666), Expect = 3e-73
Identities = 127/232 (54%), Positives = 173/232 (74%), Gaps = 2/232 (0%)
Frame = +3
Query: 150 KLIQLLDXYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NP 323
KL QL+D Y + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H +N N
Sbjct: 16 KLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNT 75
Query: 324 ALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPE 503
A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL P
Sbjct: 76 AILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPS 135
Query: 504 KTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVY 683
+TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VY
Sbjct: 136 QTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVY 195
Query: 684 DSGTIFAPEILDIKPXDLRAKFQAGVANVXALSLAIGYPTIASXPHSIANGF 839
D+G++F+PE+LD+ L KF +G++ V +L+LA+ YPT+A+ PH N +
Sbjct: 196 DNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAY 247
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 45.6 bits (103), Expect = 4e-05
Identities = 32/172 (18%), Positives = 78/172 (45%), Gaps = 3/172 (1%)
Frame = +3
Query: 159 QLLDXYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNN--PALE 332
+ ++ Y ++ +N+ + + ++ R R + +G N +M+ A+ ++ +
Sbjct: 32 EAVEKYSSVYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNKVMQVALGRSAEDELRSGIY 91
Query: 333 KLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG-LGPEKT 509
K+ ++G+ G + T EV + +R G+IA +V + E
Sbjct: 92 KVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKEGPLEQFTHEME 151
Query: 510 SFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGL 665
+ L +P +++KGT+E++ D + + G ++ A +L +L + ++ L
Sbjct: 152 PLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKL 203
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 303 DHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPA 479
D + +P + H KGNV + D KLL+ VQ + G+ + P
Sbjct: 31 DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90
Query: 480 HNTGLGPEK 506
H+ G+G +K
Sbjct: 91 HSPGVGHKK 99
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 315 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 413
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 214 RNRCSRSVSRYVAPVSCSW--EKTL*CAKPSKTTWTTIQPSRNCC 342
RN S +V R + V S EKT C++ + W +Q R CC
Sbjct: 823 RNGQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCC 867
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 29.1 bits (62), Expect = 3.8
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Frame = -1
Query: 628 RRVASEAPTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAM 449
RR + + G + + M + + VG R K++ G P+L +G T GA
Sbjct: 244 RRTDTSNTSTQTGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQ 300
Query: 448 APGRAGAWTLFSN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLL 314
A G + TL +LSR +T P ++ + GNS SRA L+
Sbjct: 301 ANGASSGSTLQGQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLM 353
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 264 ARYWSHVARYGSAASVASPRYRH 196
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 325 PSRNCCHTSRATLASCSPAETSWRSVTNCWRTKSK 429
P R HT+R SC ETS+ +VT+ K++
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -1
Query: 709 SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPFEILVGI 530
+G+ PE+Y+ + PYE E + R +++ P +P + L+ + EI G
Sbjct: 371 NGSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAELVAATERMEINEGD 427
Query: 529 E 527
E
Sbjct: 428 E 428
>At5g07190.1 68418.m00819 embryo-specific protein 3, putative
similar to embryo-specific protein 3 GI:3335171 from
[Arabidopsis thaliana]
Length = 213
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +1
Query: 376 PAETSWRSVTNCWRTKSKLQLVPVPLPHCQSSFPPTTP 489
P +W NC T + +P PH FPP TP
Sbjct: 137 PQLNTWYGHNNC-NTTGRPSSPDLPPPHFPPEFPPETP 173
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -1
Query: 466 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 353
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,926,849
Number of Sequences: 28952
Number of extensions: 441685
Number of successful extensions: 1210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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