Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M15
         (891 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC007679-1|AAX93069.1|  922|Homo sapiens unknown protein.              31   5.6  
X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec...    31   7.4  
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein...    31   7.4  
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re...    31   7.4  

>AC007679-1|AAX93069.1|  922|Homo sapiens unknown protein.
          Length = 922

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = -1

Query: 489 TVVLVAHSAGLDLRAVSDRGVGGELDNSAGVLGIVGVDIQASTDNSSALHDDLVTVSRSS 310
           T+ ++A S G+ ++ +SDRG+ G      G  GI  +  + +TD    L+  +V  + SS
Sbjct: 565 TIGVLAQSDGVPVQELSDRGI-GVFSTGTGASGIQSLSREVNTDLGELLNGRIVHDNFSS 623


>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
            (AA -19 to 4525) protein.
          Length = 4544

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 387  VGVDIQASTDNSSALHDDLVTVSRSSRNAV--QDFDRQNVAQVERIEVNRILGVAFYW-- 220
            VG+D  A  D    +   L T+SR+ R+    +D     + +VE I V+ I G   YW  
Sbjct: 1925 VGIDFHAENDTIYWVDMGLSTISRAKRDQTWREDVVTNGIGRVEGIAVDWIAG-NIYWTD 1983

Query: 219  -GFGALE 202
             GF  +E
Sbjct: 1984 QGFDVIE 1990


>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
            lipoprotein-related protein 1 (alpha-2-macroglobulin
            receptor) protein.
          Length = 4544

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 387  VGVDIQASTDNSSALHDDLVTVSRSSRNAV--QDFDRQNVAQVERIEVNRILGVAFYW-- 220
            VG+D  A  D    +   L T+SR+ R+    +D     + +VE I V+ I G   YW  
Sbjct: 1925 VGIDFHAENDTIYWVDMGLSTISRAKRDQTWREDVVTNGIGRVEGIAVDWIAG-NIYWTD 1983

Query: 219  -GFGALE 202
             GF  +E
Sbjct: 1984 QGFDVIE 1990


>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
            protein protein.
          Length = 4544

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 387  VGVDIQASTDNSSALHDDLVTVSRSSRNAV--QDFDRQNVAQVERIEVNRILGVAFYW-- 220
            VG+D  A  D    +   L T+SR+ R+    +D     + +VE I V+ I G   YW  
Sbjct: 1925 VGIDFHAENDTIYWVDMGLSTISRAKRDQTWREDVVTNGIGRVEGIAVDWIAG-NIYWTD 1983

Query: 219  -GFGALE 202
             GF  +E
Sbjct: 1984 QGFDVIE 1990


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,750,694
Number of Sequences: 237096
Number of extensions: 2476168
Number of successful extensions: 4263
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4263
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)