Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M14
         (929 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13080.1 68414.m01516 cytochrome P450 family protein identica...    31   1.4  
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro...    29   3.3  
At1g79680.1 68414.m09293 wall-associated kinase, putative simila...    29   5.8  
At1g71260.1 68414.m08224 expressed protein                             28   7.7  
At1g69260.1 68414.m07939 expressed protein                             28   7.7  

>At1g13080.1 68414.m01516 cytochrome P450 family protein identical
           to gb|D78605 cytochrome P450 monooxygenase from
           Arabidopsis thaliana and is a member of the PF|00067
           Cytochrome P450 family. ESTs gb|Z18072, gb|Z35218 and
           gb|T43466 come from this gene
          Length = 502

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +1

Query: 277 LNSVTGAPRYC-HKIVMKSGTVVRTCLDVNPNDSQHTCRVVELASNTAIADSAKVKSCAV 453
           L+ + G P  C HK+ +K G +V   L   P        VV ++S+ A     K      
Sbjct: 44  LHHLAGLPHRCFHKLSIKYGPLVFLRLGSVP--------VVVISSSEAAEAVLKTNDLEC 95

Query: 454 CNKDNCNGAGSISFSLPLATFALIATYF 537
           C++    G+G +S+     TFA    Y+
Sbjct: 96  CSRPKTVGSGKLSYGFKDITFAPYGEYW 123


>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
           protein similar to SP|P40618 High mobility group protein
           HMG2A {Gallus gallus}; contains Pfam profile PF00505:
           HMG (high mobility group) box
          Length = 446

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 831 RNKKCFINLSNIPNKPKKVVNSFFXLCK 914
           +NKK   N+   PNKPKK  +S+F  CK
Sbjct: 359 KNKKKNENVD--PNKPKKPTSSYFLFCK 384


>At1g79680.1 68414.m09293 wall-associated kinase, putative similar
           to wall-associated kinase 2 GI:4826399 from [Arabidopsis
           thaliana]
          Length = 769

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 400 LASNTAIADSAKVKSCAVCNKDNCNGAGSISFSLP 504
           L  N    DS   K+ ++ N  +CNG G    SLP
Sbjct: 168 LYCNARYGDSEYCKNISIMNDTSCNGIGCCKASLP 202


>At1g71260.1 68414.m08224 expressed protein
          Length = 238

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 613 VGLGVPNSVLSAPNLVLTEKNSKEFIVNLSSFSYICPHL 729
           + L V NS+L   +  +      EF V  ++FS+  PH+
Sbjct: 165 ISLSVNNSILKTNDYFVVPVTKAEFAVMKTAFSFALPHI 203


>At1g69260.1 68414.m07939 expressed protein
          Length = 345

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 507 QWEREGNRSSSVTVVLVAHSAGLDLRAVSDRGVGGELDNSAGVLGIVG-VDIQASTDNSS 331
           +W    N+S     +L  HSAGLD   VS   +GG    +AG    V  ++ +AS+D + 
Sbjct: 179 RWSATANKSG----LLRQHSAGLDSLQVSGESLGG--GRAAGSSSSVSELETKASSDEAR 232

Query: 330 AL 325
           +L
Sbjct: 233 SL 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,563,454
Number of Sequences: 28952
Number of extensions: 373271
Number of successful extensions: 905
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2217402144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)