Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M13
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    27   3.2  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.2  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   4.2  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    27   4.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.5  
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    26   7.3  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    26   7.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.6  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 111 RFKFDSSVRVFVLNMDANQFREFGRAVIDML 203
           +FK+DSS +VFVL+  +        A  DML
Sbjct: 149 KFKYDSSRKVFVLSKQSPTLMASASACTDML 179


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -2

Query: 622 SNPTKVASLADP*ITPPPGPEEQFRNSSGKSNSLPSQFIVTTSSSV 485
           S+P   AS   P   PPP    Q  NSS  S S+P+    +T+S V
Sbjct: 176 SSPLPTASANAPLPVPPPRRVSQ--NSSYASGSVPAATAASTASPV 219


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -2

Query: 580 TPPPGPEEQFRNSSGKSNSLPSQFIVTTSSSVHA----GLAIQLNPTTAKP 440
           TPPP P    + +SG+S +   +F  +  S V +    G   Q+N +T  P
Sbjct: 239 TPPPPPPRPSQPTSGESQNTNPRFPFSAQSFVFSVGPNGALHQVNTSTENP 289


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 374 RRLPVCYTRHY*LIEIFHYVFPILRLFGCTFRQSS*QVTRFNRRQNIIIPYVFSVARQ 201
           R+  +C + H  L+  F  +  ILR+F C FR+ S  +  F    N  + Y+F++  Q
Sbjct: 455 RQPQLCNSSHSPLLGFFTTLPGILRVFQC-FRRYSDSLKSFPHLVN-ALKYIFNILAQ 510


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -2

Query: 616 PTKVASLADP*ITPPPGPEEQFRNSSGKSNSLPSQFIVTTSSSVHAGLAIQLNPTTAKPS 437
           PT     ADP   PPP P       S  ++ LP    + + +  + G  + + P  A PS
Sbjct: 225 PTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLP----MPSRNVNNLGSQVNIPPPPATPS 280


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 531 DLPEEFLNCSSGPGGGVIQGSASEATLVGLLVAKDKTVRRFM 656
           DL   F N   GP GGV+ GS +       +V K   +R F+
Sbjct: 173 DLELLFKNMPPGPRGGVVVGSRAHMVNTAAVV-KRSFIRNFL 213


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
 Frame = +3

Query: 168 FREFGRAVID--MLASYAENIRDYDVLPSVEPGYLLRALPESAPEQPEDWKDIMKDFNQS 341
           F   G AVID  +L  Y E+  ++  +PS +    LR+ P    E  + W    +   Q 
Sbjct: 91  FVSVGNAVIDVCLLNHYLES-GNFSTIPSYKDLVNLRS-PARLAEVAKKWNP--ETATQC 146

Query: 342 IMPGVTHWQSPQFHAFYPSGSSFASIIGNMLSDGLAVVGF 461
           I+P     + P      PS SSF  I  +++S  +AVV F
Sbjct: 147 ILP----LKGPNS----PSSSSFEKIYSSIVSGLVAVVYF 178


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = -2

Query: 634 SLATSNPTKVASLADP*ITPPPGPEEQFRNSSGKSNSLPSQFIVTTSSSVHAGLAIQLNP 455
           S ++S+PT  +S      +    P       S  S+S  S     +SSS+ +  +   +P
Sbjct: 277 SSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSP 336

Query: 454 TTAKPSLS 431
           T++  ++S
Sbjct: 337 TSSSSTIS 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,325,036
Number of Sequences: 5004
Number of extensions: 69888
Number of successful extensions: 219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)