Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M13
         (809 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28848| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   1e-17
SB_34865| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   5e-12
SB_4138| Best HMM Match : Sulfolobus_pRN (HMM E-Value=4.7)             35   0.090
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)                29   5.9  
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.9  
SB_30938| Best HMM Match : DAGK_acc (HMM E-Value=1.4013e-45)           28   7.8  

>SB_28848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 75.4 bits (177), Expect(2) = 1e-17
 Identities = 31/70 (44%), Positives = 48/70 (68%)
 Frame = +3

Query: 153 MDANQFREFGRAVIDMLASYAENIRDYDVLPSVEPGYLLRALPESAPEQPEDWKDIMKDF 332
           MD+ QFRE G+ ++D +A Y ENIR   V+P V PG+L + LP  AP + E++ ++ +DF
Sbjct: 1   MDSKQFREQGKQIVDFIADYFENIRSQRVIPDVRPGFLQKHLPTEAPSKGEEFVNVKEDF 60

Query: 333 NQSIMPGVTH 362
            + IMPG ++
Sbjct: 61  EKFIMPGASN 70



 Score = 32.3 bits (70), Expect(2) = 1e-17
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 471 ASPACTELEVVTMNWLGKLLDLPEEF 548
           ++PA TELEVV M+WLG+     + F
Sbjct: 69  SNPAGTELEVVVMDWLGRYASFKQAF 94


>SB_34865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 28/67 (41%), Positives = 45/67 (67%)
 Frame = +3

Query: 153 MDANQFREFGRAVIDMLASYAENIRDYDVLPSVEPGYLLRALPESAPEQPEDWKDIMKDF 332
           M++ +FR+ G+A+ID +A + E I    V+P V+PG+LL  LP  AP Q E++  I +DF
Sbjct: 1   MNSEEFRKHGKAMIDFIADFLETIEKRRVVPDVKPGFLLHQLPNEAPSQSENFDAIFEDF 60

Query: 333 NQSIMPG 353
            + ++PG
Sbjct: 61  EKKVLPG 67


>SB_4138| Best HMM Match : Sulfolobus_pRN (HMM E-Value=4.7)
          Length = 138

 Score = 34.7 bits (76), Expect = 0.090
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +3

Query: 588 GSASEATLVGLLVAKDKTVRRFMNNNPDLDENEIKAKL 701
           G+ASEATLV +L A+  T+ +  N +P + E  + +K+
Sbjct: 1   GTASEATLVAVLAARTATLTQLQNEHPGVAEGVLMSKM 38


>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
          Length = 546

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 553 FRNSSGKSNSLPSQFIVTTSSSVHAGLAIQLNPTTAKPSLSIFP 422
           FR+++     LPS++   T+SS HA   IQ    T +   S+ P
Sbjct: 319 FRHATTTITVLPSRYNNHTASSSHATTTIQRRSVTLQQPYSVLP 362


>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = -2

Query: 580 TPPPGPEEQFRNS-SGKSNSLPSQFIVTTSSSV-HAGLAIQLNPTTAKPSLSIFPIILAN 407
           TPPP PE     S S K  + PS   +TTS+S   A                I P + AN
Sbjct: 225 TPPPPPEPSNEPSTSSKPKASPSPSSITTSTSTFEATSTTTATDEDMSEGQLIQPYVHAN 284

Query: 406 EEPEG 392
           +  EG
Sbjct: 285 QFSEG 289


>SB_30938| Best HMM Match : DAGK_acc (HMM E-Value=1.4013e-45)
          Length = 709

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 183 RAVIDMLASYAENIRDYDVLPSVEPGYLLRALPESAPEQPEDWK 314
           +A+ID L  Y+   R  DVL     G      P+  PEQP D++
Sbjct: 13  KAIIDTLKKYSNTSRLTDVLKQFRDG----VYPKYNPEQPMDYE 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,907,513
Number of Sequences: 59808
Number of extensions: 529022
Number of successful extensions: 1490
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)