Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M13
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 531 DLPEEFLNCSSGPGGGVIQGSASEATLVGLLV 626
           D+PEEFL   SG   G +  SA+   L+ L V
Sbjct: 644 DIPEEFLRPESGWAIGAMSFSAT-GILITLFV 674


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 219 NIRDYDVLPSVEPGYLLRALPESAPE 296
           N  + DV+ S+E GY L A P   PE
Sbjct: 841 NWSNQDVIKSIEKGYRLPA-PMDCPE 865


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 303 PVVRVHFQAELLTSNQVQQTAEHHNPLCFQRSS 205
           P+V+ HF+  L   N+     + H P   ++ S
Sbjct: 690 PLVKEHFKKALELMNRAVSVPQSHQPGAMEQVS 722


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,349
Number of Sequences: 438
Number of extensions: 4746
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)