Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M13
         (809 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20340.1 68415.m02375 tyrosine decarboxylase, putative simila...   210   6e-55
At4g28680.1 68417.m04098 tyrosine decarboxylase, putative simila...   189   2e-48
At3g50890.1 68416.m05572 zinc finger homeobox family protein / Z...    29   3.7  
At2g42980.1 68415.m05332 aspartyl protease family protein contai...    29   3.7  
At1g53230.1 68414.m06032 TCP family transcription factor 3 (TCP3...    29   4.8  
At3g57350.1 68416.m06384 nucleoporin interacting component-relat...    28   6.4  
At5g52510.1 68418.m06514 scarecrow-like transcription factor 8 (...    28   8.4  
At1g19950.1 68414.m02500 abscisic acid-responsive HVA22 family p...    28   8.4  

>At2g20340.1 68415.m02375 tyrosine decarboxylase, putative similar
           to tyrosine/dopa decarboxylase [Papaver somniferum]
           GI:3282527, SP|Q06087 Tyrosine decarboxylase 3 (EC
           4.1.1.25) {Petroselinum crispum}; contains Pfam profile
           PF00282: Pyridoxal-dependent decarboxylase conserved
           domain
          Length = 490

 Score =  210 bits (514), Expect = 6e-55
 Identities = 100/195 (51%), Positives = 137/195 (70%)
 Frame = +3

Query: 153 MDANQFREFGRAVIDMLASYAENIRDYDVLPSVEPGYLLRALPESAPEQPEDWKDIMKDF 332
           MD+ Q RE+G  ++D +A Y + I D+ VL  V+PGYL + LP+SAP+ PE    ++ D 
Sbjct: 12  MDSEQLREYGHLMVDFIADYYKTIEDFPVLSQVQPGYLHKLLPDSAPDHPETLDQVLDDV 71

Query: 333 NQSIMPGVTHWQSPQFHAFYPSGSSFASIIGNMLSDGLAVVGFSWMASPACTELEVVTMN 512
              I+PGVTHWQSP F A+YPS SS A  +G MLS GL +VGFSW+ SPA TELE++ ++
Sbjct: 72  RAKILPGVTHWQSPSFFAYYPSNSSVAGFLGEMLSAGLGIVGFSWVTSPAATELEMIVLD 131

Query: 513 WLGKLLDLPEEFLNCSSGPGGGVIQGSASEATLVGLLVAKDKTVRRFMNNNPDLDENEIK 692
           W+ KLL+LPE+F+  S G GGGVIQGSASEA LV L+ A+DK +R        + +N ++
Sbjct: 132 WVAKLLNLPEQFM--SKGNGGGVIQGSASEAVLVVLIAARDKVLR-------SVGKNALE 182

Query: 693 AKLVXYTSDQCNSSV 737
            KLV Y+SDQ +S++
Sbjct: 183 -KLVVYSSDQTHSAL 196


>At4g28680.1 68417.m04098 tyrosine decarboxylase, putative similar
           to SP|P54768 Tyrosine/DOPA decarboxylase 1 [Includes:
           DOPA decarboxylase (EC 4.1.1.28) (DDC); Tyrosine
           decarboxylase (EC 4.1.1.25)] {Papaver somniferum},
           SP|Q06086 Tyrosine decarboxylase 2 (EC 4.1.1.25)
           {Petroselinum crispum}; contains Pfam profile PF00282:
           Pyridoxal-dependent decarboxylase conserved domain
          Length = 545

 Score =  189 bits (460), Expect = 2e-48
 Identities = 92/198 (46%), Positives = 133/198 (67%), Gaps = 4/198 (2%)
 Frame = +3

Query: 153 MDANQFREFGRAVIDMLASYAENIRD----YDVLPSVEPGYLLRALPESAPEQPEDWKDI 320
           MD+   RE G  ++D +A Y +N++D    + VL  V+PGYL   LP+SAPE+PE  K++
Sbjct: 60  MDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKEL 119

Query: 321 MKDFNQSIMPGVTHWQSPQFHAFYPSGSSFASIIGNMLSDGLAVVGFSWMASPACTELEV 500
           + D ++ IMPG+THWQSP + A+Y S +S A  +G ML+ GL+VVGF+W+ SPA TELE+
Sbjct: 120 LDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEI 179

Query: 501 VTMNWLGKLLDLPEEFLNCSSGPGGGVIQGSASEATLVGLLVAKDKTVRRFMNNNPDLDE 680
           + ++WL KLL LP+ FL  S+G GGGVIQG+  EA LV +L A+D+ +++          
Sbjct: 180 IVLDWLAKLLQLPDHFL--STGNGGGVIQGTGCEAVLVVVLAARDRILKKV--------G 229

Query: 681 NEIKAKLVXYTSDQCNSS 734
             +  +LV Y SDQ +SS
Sbjct: 230 KTLLPQLVVYGSDQTHSS 247


>At3g50890.1 68416.m05572 zinc finger homeobox family protein /
           ZF-HD homeobox family protein hypothetical protein
           T8K22.16 - Arabidopsis thaliana, chromosome II BAC
           T8K22, PIR2:T00609
          Length = 249

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -2

Query: 538 GKSNSLPSQFIVTTSSSVHAGLAIQLNPTTAKPSLSIFPIILANEEPE 395
           GK N++ +  +++T    H     +  P +  PS+++FPI   N++P+
Sbjct: 5   GKCNAITTTTMISTEVKPHTDPEPEAKPES-DPSMALFPIKKENQKPK 51


>At2g42980.1 68415.m05332 aspartyl protease family protein contains
           pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 527

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +3

Query: 519 GKLLDLPEEFLNCSSGPGGGVIQGSASEATLV---GLLVAKDKTVRRFMNNNP 668
           GK LD+PEE  N SS   GG I  S +  +        + K+K   +   N P
Sbjct: 378 GKALDIPEETWNISSDGDGGTIIDSGTTLSYFAEPAYEIIKNKFAEKMKENYP 430


>At1g53230.1 68414.m06032 TCP family transcription factor 3 (TCP3)
           identical to transcription factor 3 (TCP3) [Arabidopsis
           thaliana] (GI:3243274); similar to flower development
           protein cycloidea (cyc3) GI:6358611 from [Misopates
           orontium]
          Length = 391

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 649 RRTVLSLATSNPTKVASLADP*ITPPPGPEEQFRNSSGKSNSLPSQFIVTTSSS 488
           R+   + A + P K  +L  P   PPP PEE   +  G+     S F+  +  S
Sbjct: 120 RQHAAAAANAKPRKTKTLISP---PPPQPEETEHHRIGEEEDNESSFLPASMDS 170


>At3g57350.1 68416.m06384 nucleoporin interacting component-related
           contains weak hit to Pfam profile PF04097: Nucleoporin
           interacting component
          Length = 875

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 562 EEQFRNSSGKSNSLPSQFIVTTSSSVHAGLAIQLNP-TTAKPSLSI 428
           +  F +S  K++ LP   ++ +S   HAG  + L+P  ++KP   +
Sbjct: 157 KRDFLHSLSKTSMLPKTKMINSSRGSHAGSLVPLSPQVSSKPGTEL 202


>At5g52510.1 68418.m06514 scarecrow-like transcription factor 8
           (SCL8)
          Length = 640

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 631 LATSNPTKVASLADP*ITPPPGPEEQFRNSSGKSNSLPSQFIVTTS 494
           +  SN   + +L  P   P P P   F  SS  S+S PS    TTS
Sbjct: 219 ITNSNSDWIQNLVTP--NPNPNPVLSFSPSSSSSSSSPSTASTTTS 262


>At1g19950.1 68414.m02500 abscisic acid-responsive HVA22 family
           protein weak similarity to SP|Q00765 Polyposis locus
           protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
           profile PF03134: TB2/DP1, HVA22 family
          Length = 315

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 655 MKRRTVLSLATSNPTKVASLADP*ITPPPGPEEQFRNSSGKSNSLPSQ 512
           ++  T  + A+ + TK+ +L  P   PPP P      ++ K N+ P+Q
Sbjct: 213 LQTETKEAKASVSQTKLTTLTPPGPPPPPPPPPPSPTTAAKRNADPAQ 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,417,877
Number of Sequences: 28952
Number of extensions: 372714
Number of successful extensions: 1054
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)