Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M11
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 29 0.80
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 29 1.1
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 29 1.1
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce... 27 4.3
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 27 4.3
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 4.3
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 27 4.3
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 26 7.5
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.9
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 25 9.9
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 29.1 bits (62), Expect = 0.80
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 155 RSPKMKPAEEKA*RS*RMNRSKIIHCSVENTRLDSTRTRSTIWRPKFR 298
++P PAE + + ++ IH +E RLDS+R +++ P R
Sbjct: 1053 KTPNTSPAELLGIKFTTLPMAQYIHSELEALRLDSSRNEQSLFMPNKR 1100
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +1
Query: 277 HLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVLTNPGYMKENFVIC 423
HL AF L PK E++ + C + NP + FV C
Sbjct: 229 HLKKGEVAFTELAPPKLPFEINVSTTDICKICGEKIKNPAVLSTGFVFC 277
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 28.7 bits (61), Expect = 1.1
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 307 RLLAPKGSLEVHEEAWN--AYPYCRTVLTNPGYMKENFVICIESLHLPDAGDQYNVHELP 480
RLLA + EVH+ N Y Y + PGY K V E+L+ GD + LP
Sbjct: 256 RLLACIKNGEVHKGLINISTYNYLEGSVVVPGYNKPVLVSGRENLNRAVQGDIVCIQILP 315
Query: 481 PEKLKT 498
++ KT
Sbjct: 316 QDQWKT 321
>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 176
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -2
Query: 726 RFXDDILYLILETKPFELGRD----ELVARHDRFHVVLPVW 616
+F D+ L+ I T P ++ ++ EL R+ RFH L VW
Sbjct: 83 QFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHKELRVW 123
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 283 ASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTV 381
++K+P I L+ G+L V + + YPY +TV
Sbjct: 331 SAKMPVLIEDLSFTGNLRVKVKLIDKYPYAKTV 363
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 4.3
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 361 YPYCRTVLTNPGYMKENFVICIESLHLPDAGDQYNVHELPPEKLKTREVVPIDI 522
YPYC+ VL P + + ESL +YN+ E+P L + VPI I
Sbjct: 1389 YPYCQVVLNEPNFYFQVLPYKGESL------SKYNLAEIP---LLDSKKVPIQI 1433
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +1
Query: 427 ESLHLPDAGDQYNVHELPPEKLKTREVVPIDIANDPLPSADYKSETDPTKFKSTKTGR 600
++L+L + VH P K+ +D + +P Y+S+TD T+ + T +
Sbjct: 260 KTLYLSVEDPSFMVHPRRPSATKSCSAA-VDCPHTTIPKPPYQSDTDLTELPTKSTAQ 316
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 433 LHLPDAGDQYNVHELPP--EKLKTREVVPIDIANDPLPSADYKSETD 567
L PD D N LP E + +P+D+A+ LPS Y S+ +
Sbjct: 83 LDFPDTLDLTNPDALPVLGESIVNPISLPVDVASPFLPSECYPSKVE 129
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 484 EKLKTREVVPIDIANDPLP--SADYKSE 561
E K ++PI++ DPLP S+D +SE
Sbjct: 810 EAEKVYTILPIEVPTDPLPNYSSDVESE 837
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -3
Query: 518 SMGTTSRVFSFSGGSSWTLYWSPASGKCSDSIHITKFSFM*PGFVSTVLQYG 363
++GT + ++SG +T PASG S ++ + + + G V+T LQ G
Sbjct: 253 AVGTVTTT-TYSGSVEYTTTLVPASGSVSGTVEVVEPAV---GTVTTTLQSG 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,367,663
Number of Sequences: 5004
Number of extensions: 71659
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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