Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M11
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0616 - 9874882-9874974,9875067-9875189,9875284-9875379,987... 144 1e-34
04_04_1543 - 34270578-34270718,34271069-34271341,34271782-342719... 29 4.5
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 29 4.5
01_06_1600 + 38552396-38552600,38552906-38552928 29 4.5
05_03_0572 - 15617618-15617701,15617842-15618012,15618117-156182... 29 6.0
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845 28 7.9
11_01_0482 - 3714442-3715593 28 7.9
06_02_0172 + 12594542-12596083 28 7.9
04_03_1029 - 21835441-21835856,21836666-21836852 28 7.9
02_05_0948 - 33003921-33006269 28 7.9
>03_02_0616 -
9874882-9874974,9875067-9875189,9875284-9875379,
9875457-9875666,9875718-9875812,9876032-9876123,
9876539-9876660
Length = 276
Score = 144 bits (348), Expect = 1e-34
Identities = 97/248 (39%), Positives = 134/248 (54%), Gaps = 23/248 (9%)
Frame = +1
Query: 154 EVSKNETGGGEGIEVIKNEPFKDYPLLGGKYSSGQYTYKIYHLASKVPAFIRLLAPKGSL 333
++ + T EG+EV++ PF+D L GK GQYT K YHL SK+P++++ AP +L
Sbjct: 2 KMEQQNTNSKEGVEVLQQVPFEDEKL--GK---GQYTSKNYHLQSKIPSWMKGFAPASAL 56
Query: 334 EVHEEAWNAYPYCRTVLTNPGYMKENFVIC---IESLHLPDAG----------DQYNVHE 474
VHEE+W AYP RT Y F C I+++ PD G ++NVH
Sbjct: 57 TVHEESWCAYPNSRTGFLIICYQCPLFSKCSLTIDTVIRPDNGCSENTKRQILREHNVHN 116
Query: 475 ----LPPEKLKTREVVPIDIANDPLPSADYKSET------DPTKFKSTKTGRGPLVGPNW 624
L E+L REV +DIA L S DY S+ D T F+S +T RGPL+ W
Sbjct: 117 QAHNLTSEQLAAREVEVVDIA---LQSRDYWSKVISAPNVDLTAFRSQRTSRGPLL-KGW 172
Query: 625 KNDVKPVMTCYKLVTAEFKWFGLQNKVXNVIXKSERRLFTIFHRQVFCSMDDWYGMTMAD 804
+ +PVMT YKLV + +GL ++ + I ER LF HR F +D+WYGMT+
Sbjct: 173 MDSCRPVMTTYKLVIMDAPIWGLGERLEDCIIAGERALFLACHRLCFAWIDEWYGMTLDQ 232
Query: 805 IRXIEDRT 828
IR +E +T
Sbjct: 233 IREMERQT 240
>04_04_1543 -
34270578-34270718,34271069-34271341,34271782-34271922,
34272365-34272667
Length = 285
Score = 29.1 bits (62), Expect = 4.5
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Frame = +3
Query: 345 RSVERLPVL*NSTDESRLHERKLRYMYRIAAFTGRRGPIQCP---RAAA*ETKDPRGGPH 515
R++ + +L TD + KLR +A GRR QC A+ + + GGP
Sbjct: 143 RTIRQAEILEGVTDIDLVINLKLREEALLAKCLGRRMCSQCGGNFNVASIDMEGENGGPR 202
Query: 516 RHCE--RPPPVGRLQIGDRPDQV-QVYEDRPR 602
+ PPP ++ RPD +V ++R R
Sbjct: 203 MYMPPLLPPPQCESKLITRPDDTEEVVKERLR 234
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 459 IQCPRAAA*ETKDPRGGPHRHCERPPP 539
++CPRAA + P P C RPPP
Sbjct: 192 LECPRAAVFAGESPGVDPICPCRRPPP 218
>01_06_1600 + 38552396-38552600,38552906-38552928
Length = 75
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 556 ICSRPTGGGRSQCLWGPPRGSLVSQAAARGHC 461
+C +GGGR W P +G ++ AA C
Sbjct: 21 LCEAGSGGGRGGGRWRPAKGDAMAMMAAERSC 52
>05_03_0572 -
15617618-15617701,15617842-15618012,15618117-15618245,
15619065-15619142
Length = 153
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 522 CERPPPVGRLQIGDRPDQVQVYEDRPRTARRAK-LEERRETGHDVLQAR 665
CE P PV R+Q+ D+ + V+ D+ + L+ E G V++AR
Sbjct: 63 CEEPSPVVRVQVLDKGFLINVFMDKSSPGLLSSILQAFDELGLTVIEAR 111
>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
Length = 958
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 406 LSCNRDSSVLFYSTGRRSTLLRVLREILSEQ 314
+ C D S + ++TG STLL L E+L EQ
Sbjct: 1 MPCLSDPSGMEFATGVMSTLLSKLAELLKEQ 31
>11_01_0482 - 3714442-3715593
Length = 383
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 456 PIQCPRAAA*ETKDPRGGPHRHC 524
P++ P A E D RGG RHC
Sbjct: 285 PVEAPAGAFDEEHDRRGGNRRHC 307
>06_02_0172 + 12594542-12596083
Length = 513
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 277 HLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVL 384
H+ K+ A +R + PKG V EE PY + V+
Sbjct: 333 HVMGKLQAEVRRVMPKGQDIVTEEQLGCMPYLKAVI 368
>04_03_1029 - 21835441-21835856,21836666-21836852
Length = 200
Score = 28.3 bits (60), Expect = 7.9
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +3
Query: 444 GRR--GPIQCPRAAA*ETKDPRGGPHRHCERPPPVGRLQIGDRPDQVQVYEDRPRTARRA 617
GRR GP PRA + R RP PV + D +V E PR +R
Sbjct: 102 GRRDEGPHGPPRAPLPDLHRGREQWRAPRLRPWPVDAHNLVIHLDNARVAEQHPREKKR- 160
Query: 618 KLEERRETGHDVLQA 662
EE++ET H QA
Sbjct: 161 --EEKKETRHVAAQA 173
>02_05_0948 - 33003921-33006269
Length = 782
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -3
Query: 539 GRGSFAMSMGTTSRVFSFSGGSSWTLYWSPASGKCSDSIHITKFSF 402
GRGSFA + G SFSGG T ++ AS C++ + KF +
Sbjct: 155 GRGSFAPTDGLGPPPASFSGGCVSTASFN-ASAYCNNKLIGAKFFY 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,957,656
Number of Sequences: 37544
Number of extensions: 510036
Number of successful extensions: 1505
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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