Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M11
(829 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31179| Best HMM Match : No HMM Matches (HMM E-Value=.) 289 2e-78
SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.) 259 2e-69
SB_40637| Best HMM Match : IP_trans (HMM E-Value=4) 64 1e-10
SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_29643| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02) 30 2.6
SB_30830| Best HMM Match : PTN_MK_N (HMM E-Value=6.8) 29 3.5
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.6
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_31179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 289 bits (709), Expect = 2e-78
Identities = 144/265 (54%), Positives = 184/265 (69%), Gaps = 14/265 (5%)
Frame = +1
Query: 76 MIIKEYRVTLPLTVEEYQVAQLYCVAEVSKNETGGGEGIEVIKNEPFKDYPLLGGKYS-- 249
++IKEYR+ LP++VEEYQ+AQLY VAE SKNETGGGEGIEV+ NEP+ GK
Sbjct: 2 VVIKEYRIPLPISVEEYQIAQLYAVAEASKNETGGGEGIEVLVNEPYTAGEGGHGKNMPP 61
Query: 250 --SGQYTYKIYHLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVLTNPGYMKENFVIC 423
GQYT+K+ HL SKVP+F+R+LAP GSLEVHE+AWNAYP+CRT +N YMKE+F +
Sbjct: 62 GMDGQYTHKLIHLHSKVPSFVRMLAPSGSLEVHEKAWNAYPFCRTEYSNT-YMKEHFSVI 120
Query: 424 IESLHLPDAGDQY-NVHELPPEKLKTREVVPIDIANDPLPSADYKSETDPTKFKSTKTGR 600
I++ H P D++ NVH L +L+ RE+V IDI ND + +YK++ DP+K S K R
Sbjct: 121 IDTWHKPGHKDEFHNVHNLGNPELQKREIVNIDIVNDKVDPHEYKADEDPSKVGSEKAKR 180
Query: 601 GPLV---------GPNWKNDVKPVMTCYKLVTAEFKWFGLQNKVXNVIXKSERRLFTIFH 753
GPL P+ + P+MTCYKL EFKW+GLQ KV ++I K+ RL FH
Sbjct: 181 GPLKKDWQQKNEEDPSKSKEGYPMMTCYKLYRVEFKWWGLQTKVESIIMKAVHRLLRNFH 240
Query: 754 RQVFCSMDDWYGMTMADIRXIEDRT 828
RQ+FC MD W+GMTM DIR IED+T
Sbjct: 241 RQMFCWMDRWFGMTMDDIRRIEDKT 265
>SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 259 bits (634), Expect = 2e-69
Identities = 138/261 (52%), Positives = 168/261 (64%), Gaps = 12/261 (4%)
Frame = +1
Query: 82 IKEYRVTLPLTVEEYQVAQLYCVAEVSKNETGGGEGIEVIKNEPFKDYPLLGGK--YSSG 255
+KEYRV LP++VE Y++AQLY V E S NETGGGEGIEV+KNEP+ + G G
Sbjct: 4 LKEYRVELPISVENYRIAQLYTVTEASMNETGGGEGIEVVKNEPYVEGKGEFGNDVTEPG 63
Query: 256 QYTYKIYHLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVLTNPGYMKENFVICIESL 435
QYT KI HL SKVP +I LAP+G+LEVHEEAWNAYPYC+TV TNP YM ENF + I++
Sbjct: 64 QYTLKIMHLKSKVPQWIVKLAPEGALEVHEEAWNAYPYCKTVYTNP-YMGENFHVIIKTW 122
Query: 436 HLPDAGDQY-NVHELPPEKLKTREVVPIDIANDP--LPSADYKSETDPTKFKSTKTGRGP 606
H ++ NVHEL +L REV+ IDIA + + DYK + DP +S K GP
Sbjct: 123 HKEGPSSRHSNVHELNESELAKREVIDIDIAAEKKLVGPHDYKEDEDPLLVRSEKANCGP 182
Query: 607 LVGPNWK-------NDVKPVMTCYKLVTAEFKWFGLQNKVXNVIXKSERRLFTIFHRQVF 765
L P+W D P+MTCYKL FKW LQ V + I K+ RL FHRQ+F
Sbjct: 183 LT-PDWNKGASDTTKDGYPMMTCYKLYDVRFKWCLLQTVVESEIGKAVYRLLRNFHRQMF 241
Query: 766 CSMDDWYGMTMADIRXIEDRT 828
C MD WYG+T+ DIR IED T
Sbjct: 242 CWMDRWYGLTLDDIRRIEDET 262
>SB_40637| Best HMM Match : IP_trans (HMM E-Value=4)
Length = 173
Score = 64.5 bits (150), Expect = 1e-10
Identities = 26/61 (42%), Positives = 40/61 (65%)
Frame = +1
Query: 646 MTCYKLVTAEFKWFGLQNKVXNVIXKSERRLFTIFHRQVFCSMDDWYGMTMADIRXIEDR 825
M YKL+ EF+++G+Q+K+ + I RR + HRQ + D+WYG+TM DIR +E+
Sbjct: 1 MCAYKLIKVEFRYWGMQSKIEHFIHSGLRRPMLMGHRQAWVWQDEWYGLTMGDIRRLEEE 60
Query: 826 T 828
T
Sbjct: 61 T 61
>SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 45.2 bits (102), Expect = 7e-05
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Frame = +1
Query: 406 ENFVICIESLHLPDAG-DQYNVHELPPEKLKTREVVPIDIANDPLPSADYKSETDPTKFK 582
EN + +E++ G Q L PE+L++REV+P+DIA D LP Y +E D +
Sbjct: 706 ENSNVALEAVTSEGVGLAQVKCFNLSPEELESREVIPVDIAFDELPEKYYVAEEDTS--- 762
Query: 583 STKTGRGPLVGPNWKNDVKPVMTCYKLVTAEFKWFGLQNKVXNVIXKSER-RLFTIFHR 756
P+M YKLV F +GL +V + K + ++T+F +
Sbjct: 763 ------------------DPIMCSYKLVNVSFDVWGLSQRVEAYVHKVLKIYIYTVFSK 803
>SB_29643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 37.1 bits (82), Expect = 0.017
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -2
Query: 822 ILDXSDVGHRHSVPVVHRTEHLSVKDCEQSSLRFXDDILYLILETKPFEL 673
+ + S + H HS P +H T+HL+V+ +QS D L L L++ P EL
Sbjct: 6 VFNSSYIVHSHSKPSIHPTKHLTVEVSKQSMDGLHDYRLDLRLQSPPLEL 55
>SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 502 EVVPIDIANDPLPSADYKSETDPTKFKSTKTGRGPLVGPNWKNDVKPVMT 651
EV+ D +DPLPS +++ +P + T + PL + KP T
Sbjct: 497 EVLCTDGEDDPLPSKQFQTSQNPLRQTRYNTSQNPLRQTRYNTSQKPSQT 546
>SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1136
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -3
Query: 827 VRSSIXRMSAIVIPYQSSIEQNTCL*KIVNNRR 729
++ S+ RM A+ YQ+++E+N L K + NRR
Sbjct: 1103 LQQSLRRMDALKKEYQTTLEKNAALAKSMQNRR 1135
>SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02)
Length = 385
Score = 29.9 bits (64), Expect = 2.6
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +1
Query: 34 VDSFMCI*VKK*LNMIIKEYRVTLPLTVEEYQVAQLYCVAEVSKNETGGGEG-IEVIKNE 210
V SFMC L M+I++ L + + +Y + LYC V I +
Sbjct: 245 VFSFMCHHTISSLIMLIRDKHKALAVFLFDYTIELLYCSVLVGTAILSRPPSEINALYTL 304
Query: 211 PFKDYPL-LGGKYSSGQYTYKIYHLASKVP 297
F+DYPL + K+ S Y ++ L+S P
Sbjct: 305 TFRDYPLEILAKFLS---FYPVFTLSSNFP 331
>SB_30830| Best HMM Match : PTN_MK_N (HMM E-Value=6.8)
Length = 755
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -2
Query: 705 YLILETKPFELGRDELVARHDRFHVVLPVWPDERS 601
+L+L KPFELG D+ V R VL W ERS
Sbjct: 40 HLLLSEKPFELGEDQSVGLAIRHPSVL--WYTERS 72
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 567 PDQVQVYEDRPRTARRAKLEERRETGHDVLQA 662
P+ V +ED + R +KLE +R HDV A
Sbjct: 4268 PEYVAKHEDNEKLRRSSKLERKRCLKHDVFSA 4299
>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 808
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 469 HELPPEKLKTREVVPIDIANDPL--PSADYKSETDPTKFKSTKTGRGP 606
HE E+ + RE P+ D P D +S DP++ ++ + +GP
Sbjct: 272 HETTAERPQRREFRPVSPKEDESQEPHEDERSPLDPSRRRTNSSSQGP 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,907,346
Number of Sequences: 59808
Number of extensions: 569397
Number of successful extensions: 1466
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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