Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M11
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.0  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 576 VQVYEDRPRTARRAKLEERRETGH 647
           +QVY      ARR  LEERR   H
Sbjct: 219 IQVYYKIFCAARRIVLEERRAQSH 242


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -2

Query: 789 SVPVVHRTEHLSVKDCEQSSLRFXDDILYLI 697
           S+PV+   + ++VK+   S+ R  +D+L ++
Sbjct: 52  SLPVIEIWDQMTVKELANSAKRDINDVLNVL 82


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 172  FHFWRPPP 149
            F+FW PPP
Sbjct: 1161 FNFWNPPP 1168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,776
Number of Sequences: 438
Number of extensions: 5103
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)