Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M08
(630 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) 251 3e-67
SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38) 29 2.4
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82) 29 4.1
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3) 28 5.4
SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12) 27 9.5
SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013) 27 9.5
>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 251 bits (615), Expect = 3e-67
Identities = 122/210 (58%), Positives = 145/210 (69%), Gaps = 1/210 (0%)
Frame = +1
Query: 4 PADAFFLVC-VGSHRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRK 180
P D + LV + +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK
Sbjct: 12 PYDTWILVVQLHCKKVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRK 71
Query: 181 MIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXX 360
+IKDGL+IKKP VHSRARVRK EAR KGRH G GKR+GTANARMPQK +W
Sbjct: 72 LIKDGLIIKKPEIVHSRARVRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLR 131
Query: 361 XXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXX 540
AKKID H+YHSLYMK+KGNVFKNKRVLMEYIH+KKAEKAR+K+LSDQ
Sbjct: 132 RLLRKYREAKKIDNHMYHSLYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARR 191
Query: 541 XXXXXXXXXXXXXXXXXXXXLLQTFAXEDE 630
+L +A E+E
Sbjct: 192 NKNKAAKQRRDDRMEQKRKDMLSAYAKEEE 221
>SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)
Length = 352
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Frame = -1
Query: 318 HTRIGSTSSLTKATVTTLST----CLCVFADTGAGVDCYRFLDDETILDHLTD-VLSGVG 154
+T +G S+ T+T LS CL + G + + L T+ +L+ +
Sbjct: 5 NTSVGYNSTSAGFTITDLSLLPAYCLAISVGLGGNGLVIGVVRKKRSLHTTTNYLLANLA 64
Query: 153 VCDLIDFIWIQPHLLFT-TSHNRG 85
+ DL++ IW P L+ T H RG
Sbjct: 65 LADLLNLIWCIPGLVLTFVEHPRG 88
>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 229 RARVRKNTEARRKGRHCGFGKRRGTANAR 315
+A RK RR+ R G K+R TANAR
Sbjct: 17 KANSRKKRRRRRRPRLTGLSKQRQTANAR 45
>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 358 LEPFVFVPIVPSVAY--AHWQYLFSYQSHSDDPFYVPLCFCGH 236
++ + F+P V + W++ ++ H+DDPF V C H
Sbjct: 72 IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114
>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
Length = 646
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 358 LEPFVFVPIVPSVAY--AHWQYLFSYQSHSDDPFYVPLCFCGH 236
++ + F+P V + W++ ++ H+DDPF V C H
Sbjct: 72 IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114
>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
Length = 248
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -1
Query: 600 FLLLGGNTFLAALAC 556
F L+GG TFLAALAC
Sbjct: 70 FALMGGLTFLAALAC 84
>SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 406 DACQSSWQFCTSGAIFLEPF-VFVPIVPSVAYAHW 305
D + S Q C FLEP VF P+ PS A+AH+
Sbjct: 192 DIVEKSQQACREHEAFLEPMGVFSPLPPS-AHAHF 225
>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
Length = 1206
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 421 RVSGIDACQSSWQFCTSGAIFLEPFVF 341
RV+G+ S WQ CT+ A L+ VF
Sbjct: 493 RVAGVKKSPSRWQQCTNAANNLDGLVF 519
>SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013)
Length = 427
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 87 GCKPLLQLEGTHPDTVRSNAHKK 19
GCKP L HPDT + A+ +
Sbjct: 336 GCKPFLMTPFPHPDTPKQEAYNE 358
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,815,264
Number of Sequences: 59808
Number of extensions: 458770
Number of successful extensions: 1283
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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