Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_M07
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    90   2e-20
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.6  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   4.6  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   6.1  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 89.8 bits (213), Expect = 2e-20
 Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
 Frame = +3

Query: 378 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 557
           EV V+G +   PI  FE +    ++ + VK  GY +PT IQ    P+ +SG++L+  AQT
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQT 204

Query: 558 GSGKTLAYILPAIVHI--NNQPPIRRGD--GPIALVLAPTXELAQQIQQVAAXFGHTSYV 725
           GSGKT A++LP I ++  +  PP    +   P+ ++++PT ELA QI      F + S V
Sbjct: 205 GSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTV 264

Query: 726 RNTCVFGG 749
           +   ++GG
Sbjct: 265 KVAVIYGG 272


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 615 VGYLCAQLLARCRPTFCRN 559
           +GY+C   +  CRP  C N
Sbjct: 253 LGYICEINVDDCRPGACHN 271


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +2

Query: 575 GLHLASNCAHK*PTAYSER*WSDCFGLGAYXRVSTTNSASCC--XFWTHILCS*HVCVW 745
           G  LA N  +     YS   W+D  G G Y R     +       ++T+ LC   VC++
Sbjct: 113 GRFLAPNLTYLLVALYSGYVWTDILGFG-YFREYLAEAVQLYFQFYYTYFLCV-IVCIF 169


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 181 GLATVAIDLEDLEALVGKKNSLEGRTCDA 267
           G+   +I+ +DL A  G KN+L     DA
Sbjct: 345 GVMIWSIETDDLHATCGTKNALLHAVNDA 373


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,800
Number of Sequences: 336
Number of extensions: 3760
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)