Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M07
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 208 5e-55
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 126 3e-30
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 106 4e-24
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 88 1e-18
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 82 1e-16
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 80 3e-16
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 74 3e-14
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 73 4e-14
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 72 8e-14
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 69 5e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 69 7e-13
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 64 2e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 62 8e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 62 1e-10
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 61 1e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 60 3e-10
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 58 1e-09
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 57 3e-09
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 56 7e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 53 4e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 52 1e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 42 9e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 37 0.003
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 37 0.003
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.025
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.18
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.2
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 27 2.9
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.8
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 3.8
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 5.0
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 5.0
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 6.7
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 208 bits (509), Expect = 5e-55
Identities = 95/167 (56%), Positives = 120/167 (71%)
Frame = +3
Query: 255 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 434
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 435 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 614
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187
Query: 615 PPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGGAP 755
P + GDGPI LVLAPT ELA QIQQ FG +S +RNTCV+GG P
Sbjct: 188 PLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVP 234
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 126 bits (304), Expect = 3e-30
Identities = 59/163 (36%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Frame = +3
Query: 270 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 446
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 447 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 626
+ ++GY++PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487
Query: 627 RGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGGAP 755
G+GPIA+++ PT ELA QI + F +R C +GGAP
Sbjct: 488 TGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAP 530
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 106 bits (254), Expect = 4e-24
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 3/131 (2%)
Frame = +3
Query: 366 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 545
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 546 VAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTXELAQQIQQVAAXFGHT 716
+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPT ELAQQIQ F
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEP 351
Query: 717 SYVRNTCVFGG 749
R V GG
Sbjct: 352 LGFRCVSVVGG 362
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 87.8 bits (208), Expect = 1e-18
Identities = 48/136 (35%), Positives = 80/136 (58%), Gaps = 3/136 (2%)
Frame = +3
Query: 357 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 527
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 528 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXF 707
G+++VG+A+TGSGKT+A+ +PA+ ++N + P LV++PT ELA Q +
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSL 259
Query: 708 GHTSYVRNTCVFGGAP 755
+ ++ V+GGAP
Sbjct: 260 IQGTNLKAVVVYGGAP 275
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 81.8 bits (193), Expect = 1e-16
Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 13/137 (9%)
Frame = +3
Query: 381 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 560
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 561 SGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTXELAQQIQQVAA 701
SGKT ++ P + + + P P+ + G P L+LAPT EL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 702 XFGHTSYVRNTCVFGGA 752
F + S+VR V+GGA
Sbjct: 277 KFCYRSWVRPCAVYGGA 293
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 80.2 bits (189), Expect = 3e-16
Identities = 43/110 (39%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 603 I-NNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGG 749
+ NN P A+VLAPT ELA QI + G + VR+ + GG
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGG 151
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 73.7 bits (173), Expect = 3e-14
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Frame = +3
Query: 393 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 572
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 573 LAYILPAIVHINNQPPIRRGD-GPIALVLAPTXELAQQIQQV 695
AY++P + + Q I G AL+L PT ELAQQ+ V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 72.9 bits (171), Expect = 4e-14
Identities = 36/109 (33%), Positives = 61/109 (55%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 603 INNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGG 749
+ + AL+L+P ELA Q +V F + +R+ + GG
Sbjct: 131 LKS---TLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGG 176
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 72.1 bits (169), Expect = 8e-14
Identities = 38/91 (41%), Positives = 53/91 (58%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
F+ N +++ V G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 603 INNQPPIRRGDGPIALVLAPTXELAQQIQQV 695
+ + G G AL++APT ELA QI V
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNV 91
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 69.3 bits (162), Expect = 5e-13
Identities = 37/109 (33%), Positives = 59/109 (54%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 603 INNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGG 749
+ +P ++ L+L PT ELA Q VA + + GG
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGG 367
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 68.9 bits (161), Expect = 7e-13
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Frame = +3
Query: 351 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 530
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 531 KNLVGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAAX 704
++++G A+TGSGKTLA+++P I ++ P R G G ++++PT ELA QI VA
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
Query: 705 FGHTSYVRNTCVFGGA 752
+ V GGA
Sbjct: 184 LLKYHHQTFGIVIGGA 199
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 64.1 bits (149), Expect = 2e-11
Identities = 34/109 (31%), Positives = 59/109 (54%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 603 INNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGG 749
++ + + L+L PT ELA Q QV G V+ GG
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGG 149
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 62.1 bits (144), Expect = 8e-11
Identities = 37/109 (33%), Positives = 54/109 (49%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
F + ++ +K + EPT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 603 INNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGG 749
+ P G AL+L PT ELA QI + A G +++ + GG
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGG 112
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 61.7 bits (143), Expect = 1e-10
Identities = 40/131 (30%), Positives = 62/131 (47%)
Frame = +3
Query: 357 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 536
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 537 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHT 716
++G A+TGSGKTLA+I+P I ++ + DG ALV++PT ELA Q + G
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRL 137
Query: 717 SYVRNTCVFGG 749
+ GG
Sbjct: 138 HSFSAGLIIGG 148
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 61.3 bits (142), Expect = 1e-10
Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Frame = +3
Query: 414 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYIL 587
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 588 PAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVR 728
+ ++ P P A+ LAP+ ELA+QI V G + V+
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 60.5 bits (140), Expect = 3e-10
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Frame = +3
Query: 357 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 536
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 537 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFG-H 713
++ AQ+G+GKT + + + I+ +R AL+L+PT ELA QIQ V G H
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDH 115
Query: 714 TSYVRNTCVFG 746
+ + C+ G
Sbjct: 116 MNVQCHACIGG 126
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 58.0 bits (134), Expect = 1e-09
Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Frame = +3
Query: 276 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 449
D++ L N F + P P++ ++ +++ K + V+G +NP+ EE FP+
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEG 55
Query: 450 VQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 626
+ + +K E T IQ P S ++L+ A TGSGKT+AY+ P + + P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP-- 113
Query: 627 RGDGPIALVLAPTXELAQQIQQVA 698
G A+++APT EL +QI + A
Sbjct: 114 --GGYRAIIVAPTRELCEQIYRQA 135
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 56.8 bits (131), Expect = 3e-09
Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Frame = +3
Query: 474 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 647
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 648 LVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGG 749
LV+APT ELA QI Q + +R + GG
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGG 229
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 55.6 bits (128), Expect = 7e-09
Identities = 33/112 (29%), Positives = 58/112 (51%)
Frame = +3
Query: 414 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 593
I F++ N + +G+ G++ P+ IQ + + ++++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 594 IVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGG 749
+ I+ +++ AL+LAPT ELAQQIQ+V G V GG
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHACIGG 124
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 53.2 bits (122), Expect = 4e-08
Identities = 34/80 (42%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Frame = +3
Query: 471 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPP--IRRGDG 638
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 639 PIALVLAPTXELAQQIQQVA 698
A+++APT EL QQI VA
Sbjct: 217 IYAVIMAPTRELCQQIYNVA 236
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 51.6 bits (118), Expect = 1e-07
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Frame = +3
Query: 390 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSG 566
S ++ P + E A+ + + G+++ TP+Q + + + +N V A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 567 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFG 746
KTLA++L A + P +++L+PT ELA QI + A + + +R + G
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIG 148
Query: 747 G 749
G
Sbjct: 149 G 149
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.9 bits (94), Expect = 9e-05
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Frame = +3
Query: 456 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 635
+ + G++ P+ +Q P ++ G +++ A++G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 636 GPIA-LVLAPTXELAQQIQQVAAXFG-HTSYVRNTCVFGG 749
G ++ LVL T ELA QI+ A F + VR +GG
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGG 157
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 534 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQI 686
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 534 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQI 686
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.025
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +3
Query: 513 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTXELAQQI 686
P+ G ++ A TGSGKTL+Y++P + ++++ P +R +V+ PT EL Q+
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 31.1 bits (67), Expect = 0.18
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 522 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQ 680
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 471 MGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 611
+ Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 27.1 bits (57), Expect = 2.9
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +3
Query: 381 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 560
V V VE PI Y GV +GY + P G P+ ++GK + V
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKRVPTV---- 308
Query: 561 SGKTLAYILPAIVHINNQPPIRRGD 635
GK +L + + + P ++RGD
Sbjct: 309 -GKVCMDML--AIDVTDVPDVKRGD 330
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 485 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 360
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 3.8
Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 4/140 (2%)
Frame = -2
Query: 521 SYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISILFDFIW* 342
+Y L +G H L ++ + F K ++ + + SY++ + + +W
Sbjct: 686 AYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYVLILCPVHPIVWK 745
Query: 341 SFENCRMWIIKVFVERLE*NRIPIWAS----HVLPSREFFFPTKASRSSKSIATVAKPRR 174
+ F L+ NR+ I AS H+ ++ F + ++ + R
Sbjct: 746 G--RIEKVDVPDFSVDLKTNRVRIIASNKREHLQAAKSVFQSISGDLVTLAVECRSSITR 803
Query: 173 IIAEFVASSKFGTTVSTAII 114
+ EF+ SK +S+ ++
Sbjct: 804 VYKEFIRLSKLCMRISSTVV 823
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 345 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 476
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 345 PYEVEEYRNKHEVTVS 392
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 320 WIIKVFVERLE*NRIPIWASHVLPSREF 237
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 474 PLSLHLVAHNQENL--LLQSIE 415
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,967,692
Number of Sequences: 5004
Number of extensions: 62612
Number of successful extensions: 216
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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